Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G265900 Prunus persica HOM05D002603 ORTHO05D002907 8.3e-60 233.4 110 100.0
Prupe.7G034500 Prunus persica HOM05D002603 ORTHO05D002907 6.4e-20 100.9 58 86.2
CiPaw.09G048800 Carya illinoinensis HOM05D002603 ORTHO05D002907 5.4e-19 97.8 58 84.5
Prupe.7G034700 Prunus persica HOM05D002603 ORTHO05D002907 9.2e-19 97.1 58 82.8
Cpa.g.sc92.80 Carica papaya HOM05D002603 ORTHO05D002907 1.6e-18 96.3 58 84.5
MBI19_g14620_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 1.6e-18 96.3 58 82.8
MBI19_g45267_MAGBIO Magnolia biondii HOM05D002603 ORTHO05D002907 1.6e-18 96.3 58 82.8
RcHm_v2.0_Chr0c29g0501071 Rosa chinensis HOM05D002603 ORTHO05D002907 2.1e-18 95.9 58 82.8
RcHm_v2.0_Chr1g0337841 Rosa chinensis HOM05D002603 ORTHO05D002907 2.1e-18 95.9 58 82.8
Actinidia17958 Actinidia chinensis HOM05D002603 ORTHO05D002907 3.5e-18 95.1 80 67.5
Cc06_g19640 Coffea canephora HOM05D002603 ORTHO05D002907 4.6e-18 94.7 58 82.8
Hma1.2p1_0252F.1_g102820 Hydrangea macrophylla HOM05D002603 ORTHO05D002907 4.6e-18 94.7 58 82.8
Lalb_Chr22g0357531 Lupinus albus HOM05D002603 ORTHO05D002907 6.0e-18 94.4 58 79.3
Prupe.4G082800 Prunus persica HOM05D002603 ORTHO05D002907 6.0e-18 94.4 58 81.0
QL07p011359 Quercus lobata HOM05D002603 ORTHO05D002907 6.0e-18 94.4 58 79.3
CANSAT64G0741 Cannabis sativa HOM05D002603 ORTHO05D002907 7.8e-18 94.0 58 81.0
MD12G1096300 Malus domestica HOM05D002603 ORTHO05D002907 7.8e-18 94.0 58 81.0
Cfa019995 Carpinus fangiana HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
Haze_20237 Corylus avellana HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
FvH4_7g07280 Fragaria vesca HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
FAN01G0401 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
FAN03G1791 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
FAN06G3043 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
FAN10G2006 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.0e-17 93.6 58 79.3
MSTRG.19795 Avicennia marina HOM05D002603 ORTHO05D002907 1.3e-17 93.2 62 75.8
Sopen12g011090 Solanum pennellii HOM05D002603 ORTHO05D002907 1.3e-17 93.2 76 65.8
PSO339G5736 Papaver somniferum HOM05D002603 ORTHO05D002907 1.7e-17 92.8 58 79.3
Cc00_g13160 Coffea canephora HOM05D002603 ORTHO05D002907 2.3e-17 92.4 95 55.8
Manes.09G003600 Manihot esculenta HOM05D002603 ORTHO05D002907 2.3e-17 92.4 58 79.3
Ca_08382_v3 Cicer arietinum L. HOM05D002603 ORTHO05D002907 3.0e-17 92.0 58 79.3
Dinv03205 Davidia involucrata HOM05D002603 ORTHO05D002907 3.0e-17 92.0 58 79.3
Solyc12g021180.2 Solanum lycopersicum HOM05D002603 ORTHO05D002907 3.0e-17 92.0 76 64.5
Thecc.05G127600 Theobroma cacao HOM05D002603 ORTHO05D002907 3.0e-17 92.0 58 79.3
GSVIVG01025743001 Vitis vinifera HOM05D002603 ORTHO05D002907 3.0e-17 92.0 58 79.3
MD14G1089400 Malus domestica HOM05D002603 ORTHO05D002907 3.9e-17 91.7 58 79.3
PGR031G2792 Punica granatum HOM05D002603 ORTHO05D002907 3.9e-17 91.7 58 77.6
Nitab4.5_0004629g0060 Nicotiana tabacum HOM05D002603 ORTHO05D002907 5.1e-17 91.3 58 77.6
PSO384G0250 Papaver somniferum HOM05D002603 ORTHO05D002907 5.1e-17 91.3 58 77.6
TAR625G1189 Trochodendron aralioides HOM05D002603 ORTHO05D002907 5.1e-17 91.3 58 75.9
Nitab4.5_0013137g0010 Nicotiana tabacum HOM05D002603 ORTHO05D002907 6.6e-17 90.9 58 77.6
Glyma.03G126200 Glycine max HOM05D002603 ORTHO05D002907 8.7e-17 90.5 58 79.3
CSS0004855 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.1e-16 90.1 79 64.6
CSS0025737 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.1e-16 90.1 58 77.6
Glyma.19G129300 Glycine max HOM05D002603 ORTHO05D002907 1.1e-16 90.1 58 77.6
Lj1g0009963 Lotus japonicus HOM05D002603 ORTHO05D002907 1.1e-16 90.1 57 77.2
CDE08G1322 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.5e-16 89.7 58 75.9
Gohir.A11G306800 Gossypium hirsutum HOM05D002603 ORTHO05D002907 1.5e-16 89.7 58 77.6
Peaxi162Scf00076g00319 Petunia axillaris HOM05D002603 ORTHO05D002907 1.5e-16 89.7 76 61.8
CSS0006853 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.9e-16 89.4 62 71.0
THA.LOC104823207 Tarenaya hassleriana HOM05D002603 ORTHO05D002907 1.9e-16 89.4 57 78.9
vmacro07780 Vaccinium macrocarpon HOM05D002603 ORTHO05D002907 1.9e-16 89.4 57 75.4
ATR0307G070 Amborella trichopoda HOM05D002603 ORTHO05D002907 2.5e-16 89.0 57 78.9
CAN.G8.30 Capsicum annuum HOM05D002603 ORTHO05D002907 3.3e-16 88.6 58 74.1
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 3.3e-16 88.6 58 75.9
Gohir.D11G322300 Gossypium hirsutum HOM05D002603 ORTHO05D002907 4.3e-16 88.2 58 75.9
Ciclev10012015m.g Citrus clementina HOM05D002603 ORTHO05D002907 5.6e-16 87.8 57 78.9
CSS0034722 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 7.3e-16 87.4 58 75.9
Eucgr.A02231 Eucalyptus grandis HOM05D002603 ORTHO05D002907 7.3e-16 87.4 58 75.9
Lj1A1089G59 Lonicera japonica HOM05D002603 ORTHO05D002907 7.3e-16 87.4 56 80.4
Medtr7g089540 Medicago truncatula HOM05D002603 ORTHO05D002907 7.3e-16 87.4 58 72.4
unitig_699.g19524 Utricularia gibba HOM05D002603 ORTHO05D002907 7.3e-16 87.4 62 67.7
Atru.chr1.1397 Acer truncatum HOM05D002603 ORTHO05D002907 9.6e-16 87.0 58 75.9
Phvul.001G121600 Phaseolus vulgaris HOM05D002603 ORTHO05D002907 1.2e-15 86.7 58 75.9
Psat3g079800 Pisum sativum HOM05D002603 ORTHO05D002907 1.2e-15 86.7 58 72.4
TPR.G16084 Trifolium pratense HOM05D002603 ORTHO05D002907 1.2e-15 86.7 58 72.4
VMungo1383G3140 Vigna mungo HOM05D002603 ORTHO05D002907 1.2e-15 86.7 58 75.9
DCAR_009136 Daucus carota HOM05D002603 ORTHO05D002907 1.6e-15 86.3 58 72.4
Rhsim03G0036700 Rhododendron simsii HOM05D002603 ORTHO05D002907 1.6e-15 86.3 57 75.4
Potri.016G035700 Populus trichocarpa HOM05D002603 ORTHO05D002907 2.1e-15 85.9 58 75.9
HPP92_015454 Vanilla planifolia HOM05D002603 ORTHO05D002907 2.8e-15 85.5 58 72.4
Migut.J01643 Erythranthe guttata HOM05D002603 ORTHO05D002907 3.6e-15 85.1 58 72.4
Sc25g0005460 Simmondsia chinensis HOM05D002603 ORTHO05D002907 4.7e-15 84.7 57 77.2
Gorai.007G352400 Gossypium raimondii HOM05D002603 ORTHO05D002907 6.2e-15 84.3 57 73.7
MSTRG.10788 Avicennia marina HOM05D002603 ORTHO05D002907 1.1e-14 83.6 79 58.2
AUR62018358 Chenopodium quinoa HOM05D002603 ORTHO05D002907 1.1e-14 83.6 58 75.9
AUR62030304 Chenopodium quinoa HOM05D002603 ORTHO05D002907 1.4e-14 83.2 58 74.1
Sabra06G0027200 Salix brachista HOM05D002603 ORTHO05D002907 1.8e-14 82.8 58 75.9
Oeu005204.2 Olea europaea HOM05D002603 ORTHO05D002907 3.1e-14 82.0 86 55.8
SalBow6G2761 Salvia bowleyana HOM05D002603 ORTHO05D002907 3.1e-14 82.0 58 70.7
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 3.1e-14 82.0 58 70.7
EL10Ac3g07250 Beta vulgaris HOM05D002603 ORTHO05D002907 4.0e-14 81.6 58 75.9
arahy.Tifrunner.gnm1.ann1.NB81DJ Arachis hypogaea HOM05D002603 ORTHO05D002907 5.2e-14 81.3 58 70.7
Cc00_g15400 Coffea canephora HOM05D002603 ORTHO05D002907 5.2e-14 81.3 57 71.9
CsaV3_3G043000 Cucumis sativus L. HOM05D002603 ORTHO05D002907 5.2e-14 81.3 62 69.4
Lalb_Chr24g0400401 Lupinus albus HOM05D002603 ORTHO05D002907 5.2e-14 81.3 60 68.3
Potri.006G040300 Populus trichocarpa HOM05D002603 ORTHO05D002907 5.2e-14 81.3 58 74.1
Sabra16G0038000 Salix brachista HOM05D002603 ORTHO05D002907 6.9e-14 80.9 90 52.2
Lsat_1_v5_gn_5_156820 Lactuca sativa HOM05D002603 ORTHO05D002907 9.0e-14 80.5 57 75.4
arahy.Tifrunner.gnm1.ann1.K86MNX Arachis hypogaea HOM05D002603 ORTHO05D002907 1.2e-13 80.1 58 69.0
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 1.2e-13 80.1 58 67.2
TWI74G0363 Tripterygium wilfordii HOM05D002603 ORTHO05D002907 1.2e-13 80.1 58 74.1
Cc00_g08220 Coffea canephora HOM05D002603 ORTHO05D002907 2.0e-13 79.3 43 86.0
HanXRQChr01g0008101 Helianthus annuus HOM05D002603 ORTHO05D002907 2.0e-13 79.3 57 71.9
Hund19086 Selenicereus undatus HOM05D002603 ORTHO05D002907 2.6e-13 79.0 58 72.4
MELO3C026602.2 Cucumis melo HOM05D002603 ORTHO05D002907 4.4e-13 78.2 58 70.7
RcHm_v2.0_Chr1g0337741 Rosa chinensis HOM05D002603 ORTHO05D002907 4.4e-13 78.2 91 52.7
SGA_v2.0_scaffold66G22361 Striga asiatica HOM05D002603 ORTHO05D002907 5.8e-13 77.8 58 69.0
Peaxi162Scf01087g00001 Petunia axillaris HOM05D002603 ORTHO05D002907 7.6e-13 77.4 58 65.5
ECA248G3411 Erigeron canadensis HOM05D002603 ORTHO05D002907 4.9e-12 74.7 57 71.9
Sed0008427 Sechium edule HOM05D002603 ORTHO05D002907 6.4e-12 74.3 57 66.7
Prupe.7G035100 Prunus persica HOM05D002603 ORTHO05D002907 8.4e-12 73.9 40 85.0
RcHm_v2.0_Chr1g0337541 Rosa chinensis HOM05D002603 ORTHO05D002907 1.1e-11 73.6 41 85.4
ECA233G2731 Erigeron canadensis HOM05D002603 ORTHO05D002907 3.2e-11 72.0 57 66.7
Os11g0136800 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 4.2e-11 71.6 57 66.7
Os12g0133700 Oryza sativa ssp. japonica HOM05D002603 ORTHO05D002907 4.2e-11 71.6 57 66.7
Zm00001eb093380 Zea mays HOM05D002603 ORTHO05D002907 5.4e-11 71.2 57 64.9
ECA233G3050 Erigeron canadensis HOM05D002603 ORTHO05D002907 7.1e-11 70.9 85 50.6
Mapoly0062s0043 Marchantia polymorpha HOM05D002603 ORTHO05D002907 2.7e-10 68.9 58 58.6
ECA234G4417 Erigeron canadensis HOM05D002603 ORTHO05D002907 4.6e-10 68.2 57 63.2
ECA233G1535 Erigeron canadensis HOM05D002603 ORTHO05D002907 1.7e-09 66.2 75 53.3
SMO340G0300 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 5.1e-09 64.7 57 56.1
Thhalv10005645m.g Eutrema salsugineum HOM05D002603 ORTHO05D002907 2.5e-08 62.4 56 64.3
AL3G34390 Arabidopsis lyrata HOM05D002603 ORTHO05D002907 4.3e-08 61.6 56 62.5
CARHR161780 Cardamine hirsuta HOM05D002603 ORTHO05D002907 4.3e-08 61.6 56 62.5
CBR_g31863 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-08 61.6 78 44.9
SMO134G0105 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 5.6e-08 61.2 58 53.4
Pp3c23_1130 Physcomitrium patens HOM05D002603 ORTHO05D002907 7.3e-08 60.8 58 56.9
CiPaw.10G040800 Carya illinoinensis HOM05D002603 ORTHO05D002907 1.3e-07 60.1 31 83.9
Carub.0006s0316 Capsella rubella HOM05D002603 ORTHO05D002907 1.6e-07 59.7 56 58.9
Pp3c20_10210 Physcomitrium patens HOM05D002603 ORTHO05D002907 2.8e-07 58.9 58 56.9
SMO137G0144 Selaginella moellendorffii HOM05D002603 ORTHO05D002907 2.8e-07 58.9 57 56.1
BcaC07g41585 Brassica carinata HOM05D002603 ORTHO05D002907 8.1e-07 57.4 56 60.7
A09p62310 Brassica napus HOM05D002603 ORTHO05D002907 8.1e-07 57.4 56 60.7
C08p45870 Brassica napus HOM05D002603 ORTHO05D002907 8.1e-07 57.4 56 60.7
BolC8t52139H Brassica oleracea HOM05D002603 ORTHO05D002907 8.1e-07 57.4 56 60.7
BraA09t41593Z Brassica rapa HOM05D002603 ORTHO05D002907 8.1e-07 57.4 56 60.7
Peaxi162Scf00406g00712 Petunia axillaris HOM05D002603 ORTHO05D002907 1.4e-06 56.6 34 70.6
BcaB08g34381 Brassica carinata HOM05D002603 ORTHO05D002907 1.8e-06 56.2 56 60.7
unitig_32.g10802 Utricularia gibba HOM05D001370 ORTHO05D004632 5.3e-06 54.7 58 55.2


User provided reference genes

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