Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G265500 Prunus persica HOM05D006850 ORTHO05D008545 6.0e-148 527.3 240 100.0
MD03G1165500 Malus domestica HOM05D006850 ORTHO05D008545 2.0e-127 459.1 243 87.2
CiPaw.14G112900 Carya illinoinensis HOM05D006850 ORTHO05D008545 5.7e-106 387.9 240 71.7
Haze_23232 Corylus avellana HOM05D006850 ORTHO05D008545 5.7e-106 387.9 241 73.4
QL01p017096 Quercus lobata HOM05D006850 ORTHO05D008545 5.7e-106 387.9 240 73.3
Cfa009858 Carpinus fangiana HOM05D006850 ORTHO05D008545 3.7e-105 385.2 241 73.0
Manes.02G139100 Manihot esculenta HOM05D006850 ORTHO05D008545 8.3e-105 384.0 248 72.2
RcHm_v2.0_Chr5g0050481 Rosa chinensis HOM05D006850 ORTHO05D008545 8.3e-105 384.0 262 71.0
PGR102G2982 Punica granatum HOM05D006850 ORTHO05D008545 2.7e-103 379.0 242 71.1
Potri.001G275300 Populus trichocarpa HOM05D006850 ORTHO05D008545 1.6e-100 369.8 248 69.4
Dinv36163 Davidia involucrata HOM05D006850 ORTHO05D008545 2.8e-100 369.0 250 67.2
Sabra16G0169600 Salix brachista HOM05D006850 ORTHO05D008545 2.0e-98 362.8 270 64.4
CANSAT54G0445 Cannabis sativa HOM05D006850 ORTHO05D008545 2.2e-97 359.4 247 66.8
Actinidia06966 Actinidia chinensis HOM05D006850 ORTHO05D008545 2.8e-97 359.0 234 68.8
Hma1.2p1_0262F.1_g105345 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 6.3e-97 357.8 244 67.6
Hma1.2p1_3601F.1_g336990 Hydrangea macrophylla HOM05D006850 ORTHO05D008545 6.3e-97 357.8 244 67.6
Rhsim13G0209200 Rhododendron simsii HOM05D006850 ORTHO05D008545 6.3e-97 357.8 240 65.4
arahy.Tifrunner.gnm1.ann1.TFQN26 Arachis hypogaea HOM05D006850 ORTHO05D008545 4.1e-96 355.1 246 68.7
Gorai.001G133600 Gossypium raimondii HOM05D006850 ORTHO05D008545 1.6e-95 353.2 240 67.9
CSS0022862 Camellia sinensis var. sinensis HOM05D006850 ORTHO05D008545 2.0e-95 352.8 241 67.2
Duzib170G0642 Durio zibethinus HOM05D006850 ORTHO05D008545 2.0e-95 352.8 239 68.2
Duzib150G1265 Durio zibethinus HOM05D006850 ORTHO05D008545 2.7e-95 352.4 241 69.7
TWI31G0452 Tripterygium wilfordii HOM05D006850 ORTHO05D008545 4.5e-95 351.7 238 66.4
arahy.Tifrunner.gnm1.ann1.5G2EZD Arachis hypogaea HOM05D006850 ORTHO05D008545 5.9e-95 351.3 246 67.9
Gohir.D07G123600 Gossypium hirsutum HOM05D006850 ORTHO05D008545 7.8e-95 350.9 240 67.5
Eucgr.B03735 Eucalyptus grandis HOM05D006850 ORTHO05D008545 1.0e-94 350.5 242 64.9
Oeu030634.1 Olea europaea HOM05D006850 ORTHO05D008545 1.7e-94 349.7 240 63.3
GSVIVG01037285001 Vitis vinifera HOM05D006850 ORTHO05D008545 5.0e-94 348.2 236 66.1
Gohir.A07G119400 Gossypium hirsutum HOM05D006850 ORTHO05D008545 6.6e-94 347.8 240 67.5
vmacro04034 Vaccinium macrocarpon HOM05D006850 ORTHO05D008545 1.5e-93 346.7 241 65.6
Cc01_g05370 Coffea canephora HOM05D006850 ORTHO05D008545 2.5e-93 345.9 241 62.7
Cpa.g.sc157.64 Carica papaya HOM05D006850 ORTHO05D008545 5.6e-93 344.7 231 68.0
Atru.chr3.2891 Acer truncatum HOM05D006850 ORTHO05D008545 9.5e-93 344.0 241 65.1
FAN16G3159 Fragaria x ananassa HOM05D006850 ORTHO05D008545 2.8e-92 342.4 240 68.8
MELO3C014560.2 Cucumis melo HOM05D006850 ORTHO05D008545 6.1e-92 341.3 245 64.5
FAN21G1525 Fragaria x ananassa HOM05D006850 ORTHO05D008545 1.0e-91 340.5 240 68.3
FAN25G3781 Fragaria x ananassa HOM05D006850 ORTHO05D008545 1.0e-91 340.5 240 68.3
CsaV3_6G038970 Cucumis sativus L. HOM05D006850 ORTHO05D008545 3.0e-91 339.0 245 64.1
FvH4_3g27811 Fragaria vesca HOM05D006850 ORTHO05D008545 3.0e-91 339.0 240 67.5
ClCG02G022830 Citrullus lanatus HOM05D006850 ORTHO05D008545 5.2e-91 338.2 245 63.7
Psat0s3115g0040 Pisum sativum HOM05D006850 ORTHO05D008545 2.0e-90 336.3 247 66.0
Glyma.20G041000 Glycine max HOM05D006850 ORTHO05D008545 3.4e-90 335.5 242 65.3
Phvul.006G014500 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 3.7e-89 332.0 242 65.7
MSTRG.18462 Avicennia marina HOM05D006850 ORTHO05D008545 4.9e-89 331.6 241 61.4
VMungo0540G1950 Vigna mungo HOM05D006850 ORTHO05D008545 4.9e-89 331.6 243 65.0
Ca_03895_v3 Cicer arietinum L. HOM05D006850 ORTHO05D008545 6.4e-89 331.3 247 66.4
Glyma.07G232000 Glycine max HOM05D006850 ORTHO05D008545 2.4e-88 329.3 238 65.1
Sc06g0004690 Simmondsia chinensis HOM05D006850 ORTHO05D008545 5.4e-88 328.2 233 62.7
Ah.06g194580 Amaranthus hybridus HOM05D006850 ORTHO05D008545 9.2e-88 327.4 243 59.3
AUR62000194 Chenopodium quinoa HOM05D006850 ORTHO05D008545 1.6e-87 326.6 238 61.3
Lj6g0025243 Lotus japonicus HOM05D006850 ORTHO05D008545 1.6e-87 326.6 264 59.5
SalBow6G2930 Salvia bowleyana HOM05D006850 ORTHO05D008545 1.6e-87 326.6 228 65.4
Hund07436 Selenicereus undatus HOM05D006850 ORTHO05D008545 1.6e-87 326.6 237 61.6
Manes.01G178500 Manihot esculenta HOM05D006850 ORTHO05D008545 2.0e-87 326.2 209 71.3
Medtr0180s0050 Medicago truncatula HOM05D006850 ORTHO05D008545 5.0e-86 321.6 270 59.3
TAR633G0745 Trochodendron aralioides HOM05D006850 ORTHO05D008545 5.0e-86 321.6 218 67.4
Ciclev10016719m.g Citrus clementina HOM05D006850 ORTHO05D008545 1.1e-85 320.5 211 67.3
EL10Ac4g10117 Beta vulgaris HOM05D006850 ORTHO05D008545 1.9e-85 319.7 238 57.6
Thhalv10026099m.g Eutrema salsugineum HOM05D006850 ORTHO05D008545 4.3e-85 318.5 247 61.1
Sopen01g004290 Solanum pennellii HOM05D006850 ORTHO05D008545 4.3e-85 318.5 230 60.9
DCAR_024408 Daucus carota HOM05D006850 ORTHO05D008545 5.6e-85 318.2 270 55.9
ECA238G2187 Erigeron canadensis HOM05D006850 ORTHO05D008545 9.5e-85 317.4 218 64.2
Migut.D00666 Erythranthe guttata HOM05D006850 ORTHO05D008545 9.5e-85 317.4 243 58.4
Sed0015967 Sechium edule HOM05D006850 ORTHO05D008545 9.5e-85 317.4 248 61.3
BolC1t01003H Brassica oleracea HOM05D006850 ORTHO05D008545 1.2e-84 317.0 247 61.5
CARHR236810 Cardamine hirsuta HOM05D006850 ORTHO05D008545 2.1e-84 316.2 261 58.2
Lalb_Chr21g0314461 Lupinus albus HOM05D006850 ORTHO05D008545 2.8e-84 315.8 218 66.5
Sp7g27010 Schrenkiella parvula HOM05D006850 ORTHO05D008545 2.8e-84 315.8 248 60.9
Hund21980 Selenicereus undatus HOM05D006850 ORTHO05D008545 8.0e-84 314.3 197 69.0
BcaC09g51693 Brassica carinata HOM05D006850 ORTHO05D008545 4.0e-83 312.0 247 61.1
Solyc01g008780.3 Solanum lycopersicum HOM05D006850 ORTHO05D008545 6.8e-83 311.2 230 60.4
HanXRQChr14g0427601 Helianthus annuus HOM05D006850 ORTHO05D008545 8.9e-83 310.8 219 65.3
Sed0010964 Sechium edule HOM05D006850 ORTHO05D008545 1.2e-82 310.5 245 60.4
BcaNung01334 Brassica carinata HOM05D004115 ORTHO05D005004 2.0e-82 309.7 248 61.3
AL7G23370 Arabidopsis lyrata HOM05D006850 ORTHO05D008545 2.6e-82 309.3 261 57.9
AT4G29070 Arabidopsis thaliana HOM05D006850 ORTHO05D008545 5.8e-82 308.1 262 58.4
AUR62006544 Chenopodium quinoa HOM05D006850 ORTHO05D008545 1.3e-81 307.0 231 60.6
Lsat_1_v5_gn_2_3500 Lactuca sativa HOM05D006850 ORTHO05D008545 1.7e-81 306.6 220 60.9
THA.LOC104826454 Tarenaya hassleriana HOM05D006850 ORTHO05D008545 8.3e-81 304.3 248 58.9
Carub.0007s1152 Capsella rubella HOM05D006850 ORTHO05D008545 1.1e-80 303.9 274 56.2
Aa31LG2G21380 Aethionema arabicum HOM05D006850 ORTHO05D008545 1.9e-80 303.1 250 57.6
Peaxi162Scf00032g02418 Petunia axillaris HOM05D006850 ORTHO05D008545 3.2e-80 302.4 225 59.6
PGSC0003DMG400022716 Solanum tuberosum HOM05D006850 ORTHO05D008545 3.2e-80 302.4 230 58.3
SGA_v2.0_scaffold29G12238 Striga asiatica HOM05D006850 ORTHO05D008545 4.1e-80 302.0 234 59.0
Aqoxy1G00367 Aquilegia oxysepala HOM05D006850 ORTHO05D008545 3.5e-79 298.9 230 62.2
unitig_0.g300 Utricularia gibba HOM05D006850 ORTHO05D008545 7.8e-79 297.7 229 60.3
TPR.G16604 Trifolium pratense HOM05D006850 ORTHO05D008545 2.3e-78 296.2 199 68.8
Thecc.09G248000 Theobroma cacao HOM05D006850 ORTHO05D008545 5.0e-78 295.0 201 68.2
CAN.G64.14 Capsicum annuum HOM05D006850 ORTHO05D008545 6.6e-78 294.7 261 51.7
BcaC07g38376 Brassica carinata HOM05D006850 ORTHO05D008545 1.6e-76 290.0 223 58.7
C08p11310 Brassica napus HOM05D006850 ORTHO05D008545 1.6e-76 290.0 223 58.7
BolC8t48803H Brassica oleracea HOM05D006850 ORTHO05D008545 6.8e-75 284.6 223 59.2
COL.COLO4_32765 Corchorus olitorius HOM05D006850 ORTHO05D008545 8.9e-75 284.3 224 59.8
Nn7g36731 Nelumbo nucifera HOM05D006850 ORTHO05D008545 4.4e-74 282.0 201 63.7
PSO339G1255 Papaver somniferum HOM05D006850 ORTHO05D008545 1.3e-73 280.4 233 56.7
PSO384G2311 Papaver somniferum HOM05D006850 ORTHO05D008545 2.9e-73 279.3 233 56.7
A08p19760 Brassica napus HOM05D004115 ORTHO05D008545 2.1e-71 273.1 206 62.1
Phvul.009G232900 Phaseolus vulgaris HOM05D006850 ORTHO05D008545 3.5e-71 272.3 216 62.5
BraA08t33936Z Brassica rapa HOM05D004115 ORTHO05D008545 4.6e-71 271.9 206 61.7
Nitab4.5_0003488g0060 Nicotiana tabacum HOM05D006850 ORTHO05D008545 6.0e-71 271.6 230 55.7
Nitab4.5_0000718g0310 Nicotiana tabacum HOM05D006850 ORTHO05D008545 1.5e-69 266.9 225 55.6
MBI07_g26873_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 1.6e-68 263.5 228 58.8
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 4.7e-68 261.9 206 60.7
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 4.7e-68 261.9 206 60.7
MBI07_g21930_MAGBIO Magnolia biondii HOM05D006850 ORTHO05D008545 1.5e-66 256.9 230 56.1
ATR0745G042 Amborella trichopoda HOM05D006850 ORTHO05D008545 3.5e-63 245.7 251 51.4
Lj1P279T21 Lonicera japonica HOM05D006850 ORTHO05D008545 1.9e-61 240.0 161 66.5
CDE09G0720 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 1.2e-60 237.3 192 56.8
HPP92_025151 Vanilla planifolia HOM05D006850 ORTHO05D008545 1.3e-57 227.3 125 79.2
CDE08G0294 Ceratophyllum demersum HOM05D006850 ORTHO05D008545 1.1e-56 224.2 191 57.1
SHI34292 Sapria himalayana HOM05D006850 ORTHO05D008545 2.3e-54 216.5 167 58.7
BcaB03g12596 Brassica carinata HOM05D006850 ORTHO05D008545 4.0e-51 205.7 223 47.5
SEGI_38632 Sequoiadendron giganteum HOM05D006850 ORTHO05D008545 2.9e-49 199.5 121 67.8
Mapoly0002s0074 Marchantia polymorpha HOM05D006850 ORTHO05D008545 3.5e-39 166.0 122 59.8
Pp3c9_17190 Physcomitrium patens HOM05D006850 ORTHO05D008545 4.9e-33 145.6 120 53.3
Pp3c15_13470 Physcomitrium patens HOM05D006850 ORTHO05D008545 6.5e-33 145.2 120 52.5
HPP92_025149 Vanilla planifolia HOM05D006850 ORTHO05D008545 8.4e-33 144.8 82 78.0
SMO145G0227 Selaginella moellendorffii HOM05D006850 ORTHO05D008545 1.9e-32 143.7 84 66.7
CBR_g29725 Chara braunii HOM05D006850 ORTHO05D008545 3.7e-28 129.4 121 45.5
Actinidia13010 Actinidia chinensis HOM05D006850 ORTHO05D008545 1.0e-17 94.7 181 35.4


User provided reference genes

Program Settings