Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G262600 Prunus persica HOM05D000122 ORTHO05D000139 2.0e-46 188.7 94 100.0
Prupe.4G262700 Prunus persica HOM05D000122 ORTHO05D000139 7.6e-30 133.7 93 73.1
FAN01G2020 Fragaria x ananassa HOM05D000122 ORTHO05D017028 8.8e-10 67.0 95 38.9
RcHm_v2.0_Chr1g0324571 Rosa chinensis HOM05D000122 ORTHO05D000139 1.5e-09 66.2 89 41.6
FvH4_1g11800 Fragaria vesca HOM05D000122 ORTHO05D011900 2.0e-09 65.9 96 36.5
RcHm_v2.0_Chr2g0116391 Rosa chinensis HOM05D000122 ORTHO05D000139 2.0e-09 65.9 93 35.5
FAN03G0406 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.3e-09 65.1 93 38.7
FAN03G1175 Fragaria x ananassa HOM05D000122 ORTHO05D000139 3.3e-09 65.1 93 36.6
FAN10G0599 Fragaria x ananassa HOM05D000122 ORTHO05D013072 4.3e-09 64.7 93 38.7
RcHm_v2.0_Chr1g0356131 Rosa chinensis HOM05D000122 ORTHO05D017028 4.3e-09 64.7 96 38.5
FAN10G1137 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.7e-09 64.3 93 38.7
FAN10G3626 Fragaria x ananassa HOM05D000122 ORTHO05D017028 5.7e-09 64.3 95 37.9
FAN10G4142 Fragaria x ananassa HOM05D000122 ORTHO05D017028 5.7e-09 64.3 95 37.9
FvH4_1g22250 Fragaria vesca HOM05D000122 ORTHO05D000139 7.4e-09 63.9 93 36.6
FAN06G1686 Fragaria x ananassa HOM05D000122 ORTHO05D017028 7.4e-09 63.9 95 37.9
FAN19G1507 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.4e-09 63.9 93 36.6
FAN23G0598 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.4e-09 63.9 93 36.6
FAN26G0425 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.4e-09 63.9 93 36.6
FAN28G1864 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.4e-09 63.9 93 36.6
RcHm_v2.0_Chr5g0017271 Rosa chinensis HOM05D000122 ORTHO05D019178 7.4e-09 63.9 100 37.0
FvH4_7g14580 Fragaria vesca HOM05D000122 ORTHO05D017028 9.7e-09 63.5 95 37.9
FAN06G4851 Fragaria x ananassa HOM05D000122 ORTHO05D000139 9.7e-09 63.5 93 37.6
FAN06G3477 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-08 62.8 96 35.4
FAN10G1841 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-08 62.8 96 35.4
FAN10G2238 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-08 62.8 96 35.4
FAN19G3016 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.7e-08 62.8 96 34.4
RcHm_v2.0_Chr3g0486401 Rosa chinensis HOM05D000122 ORTHO05D019178 1.7e-08 62.8 100 39.0
Prupe.7G210400 Prunus persica HOM05D000122 ORTHO05D011900 2.8e-08 62.0 88 37.5
RcHm_v2.0_Chr1g0347151 Rosa chinensis HOM05D000122 ORTHO05D000139 2.8e-08 62.0 93 35.5
RcHm_v2.0_Chr1g0347221 Rosa chinensis HOM05D000122 ORTHO05D000139 2.8e-08 62.0 93 33.3
CsaV3_3G028080 Cucumis sativus L. HOM05D000122 ORTHO05D000139 3.7e-08 61.6 93 35.5
MD02G1078200 Malus domestica HOM05D000122 ORTHO05D011900 3.7e-08 61.6 93 36.6
Prupe.2G312500 Prunus persica HOM05D000122 ORTHO05D000139 3.7e-08 61.6 80 42.5
MD02G1084300 Malus domestica HOM05D000122 ORTHO05D011900 4.8e-08 61.2 93 33.3
RcHm_v2.0_Chr1g0318731 Rosa chinensis HOM05D000122 ORTHO05D000139 4.8e-08 61.2 89 34.8
RcHm_v2.0_Chr4g0400701 Rosa chinensis HOM05D000122 ORTHO05D000139 4.8e-08 61.2 95 36.8
Cfa015898 Carpinus fangiana HOM05D000122 ORTHO05D000139 6.3e-08 60.8 90 33.3
Prupe.7G210700 Prunus persica HOM05D000122 ORTHO05D011900 6.3e-08 60.8 88 38.6
FAN01G2327 Fragaria x ananassa HOM05D000122 ORTHO05D000139 8.2e-08 60.5 96 35.4
RcHm_v2.0_Chr1g0352441 Rosa chinensis HOM05D000122 ORTHO05D000139 8.2e-08 60.5 89 33.7
MD02G1078000 Malus domestica HOM05D000122 ORTHO05D011900 1.1e-07 60.1 88 37.5
MD08G1241600 Malus domestica HOM05D000122 ORTHO05D000139 1.1e-07 60.1 93 33.3
Prupe.7G210900 Prunus persica HOM05D000122 ORTHO05D011900 1.1e-07 60.1 93 34.4
Prupe.8G097800 Prunus persica HOM05D000122 ORTHO05D025502 1.1e-07 60.1 93 36.6
RcHm_v2.0_Chr4g0400511 Rosa chinensis HOM05D000122 ORTHO05D000139 1.1e-07 60.1 95 35.8
ClCG05G008800 Citrullus lanatus HOM05D000122 ORTHO05D000139 1.4e-07 59.7 93 33.3
MD04G1123100 Malus domestica HOM05D000122 ORTHO05D000139 1.4e-07 59.7 88 34.1
RcHm_v2.0_Chr4g0400441 Rosa chinensis HOM05D000122 ORTHO05D000139 1.4e-07 59.7 95 36.8
Sed0009183 Sechium edule HOM05D000122 ORTHO05D000139 1.8e-07 59.3 93 32.3
FAN04G1397 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.4e-07 58.9 88 37.5
Cfa016385 Carpinus fangiana HOM05D000122 ORTHO05D000139 3.1e-07 58.5 91 35.2
MELO3C006980.2 Cucumis melo HOM05D000122 ORTHO05D000139 3.1e-07 58.5 93 35.5
FAN11G3488 Fragaria x ananassa HOM05D000122 ORTHO05D019178 3.1e-07 58.5 100 35.0
MD01G1222100 Malus domestica HOM05D000122 ORTHO05D000139 3.1e-07 58.5 95 37.9
MD07G1292700 Malus domestica HOM05D000122 ORTHO05D000139 3.1e-07 58.5 94 37.2
RcHm_v2.0_Chr6g0265551 Rosa chinensis HOM05D000122 ORTHO05D000139 3.1e-07 58.5 93 32.3
FAN21G3289 Fragaria x ananassa HOM05D000122 ORTHO05D019178 4.1e-07 58.2 100 35.0
Prupe.7G210600 Prunus persica HOM05D000122 ORTHO05D011900 4.1e-07 58.2 93 33.3
RcHm_v2.0_Chr1g0318251 Rosa chinensis HOM05D000122 ORTHO05D011900 4.1e-07 58.2 93 34.4
FvH4_3g10570 Fragaria vesca HOM05D000122 ORTHO05D019178 5.3e-07 57.8 98 34.7
MD02G1077900 Malus domestica HOM05D000122 ORTHO05D011900 5.3e-07 57.8 92 35.9
Prupe.7G073200 Prunus persica HOM05D000122 ORTHO05D000139 5.3e-07 57.8 95 33.7
CsaV3_3G028070 Cucumis sativus L. HOM05D000122 ORTHO05D000139 6.9e-07 57.4 88 34.1
FAN20G1235 Fragaria x ananassa HOM05D000122 ORTHO05D025502 6.9e-07 57.4 81 35.8
MD07G1291200 Malus domestica HOM05D000122 ORTHO05D000139 6.9e-07 57.4 96 33.3
MD07G1292800 Malus domestica HOM05D000122 ORTHO05D000139 6.9e-07 57.4 95 35.8
MD07G1292900 Malus domestica HOM05D000122 ORTHO05D000139 6.9e-07 57.4 95 35.8
RcHm_v2.0_Chr1g0381131 Rosa chinensis HOM05D000122 ORTHO05D000139 6.9e-07 57.4 94 37.2
Sed0027232 Sechium edule HOM05D000122 ORTHO05D000139 9.1e-07 57.0 88 35.2
MD08G1214800 Malus domestica HOM05D000122 ORTHO05D000139 1.2e-06 56.6 95 34.7
Prupe.6G143000 Prunus persica HOM05D000122 ORTHO05D000139 1.2e-06 56.6 103 34.0
RcHm_v2.0_Chr1g0352401 Rosa chinensis HOM05D000122 ORTHO05D000139 1.2e-06 56.6 84 34.5
RcHm_v2.0_Chr4g0424091 Rosa chinensis HOM05D000122 ORTHO05D022612 1.2e-06 56.6 76 38.2
MD07G1291500 Malus domestica HOM05D000122 ORTHO05D000139 1.5e-06 56.2 94 39.4
FvH4_7g31861 Fragaria vesca HOM05D000122 ORTHO05D000139 2.0e-06 55.8 93 34.4
FAN10G1029 Fragaria x ananassa HOM05D000122 ORTHO05D011900 2.0e-06 55.8 93 36.6
FAN10G1723 Fragaria x ananassa HOM05D000122 ORTHO05D011900 2.0e-06 55.8 93 36.6
MD04G1004700 Malus domestica HOM05D000122 ORTHO05D000139 2.0e-06 55.8 98 34.7
Prupe.2G308800 Prunus persica HOM05D000122 ORTHO05D000139 2.6e-06 55.5 96 36.5
Prupe.2G312600 Prunus persica HOM05D000122 ORTHO05D000139 2.6e-06 55.5 104 34.6
Prupe.6G143100 Prunus persica HOM05D000122 ORTHO05D000139 2.6e-06 55.5 96 34.4
Ciclev10004573m.g Citrus clementina HOM05D000122 ORTHO05D000139 3.4e-06 55.1 103 30.1
FvH4_7g31201 Fragaria vesca HOM05D000122 ORTHO05D000139 3.4e-06 55.1 95 33.7
FvH4_7g31300 Fragaria vesca HOM05D000122 ORTHO05D000139 3.4e-06 55.1 95 33.7
FvH4_7g31310 Fragaria vesca HOM05D000122 ORTHO05D012678 3.4e-06 55.1 95 33.7
FAN06G3593 Fragaria x ananassa HOM05D000122 ORTHO05D012678 3.4e-06 55.1 95 33.7
FAN06G4197 Fragaria x ananassa HOM05D000122 ORTHO05D012678 3.4e-06 55.1 95 33.7
FAN24G3275 Fragaria x ananassa HOM05D000122 ORTHO05D025502 3.4e-06 55.1 81 34.6
RcHm_v2.0_Chr1g0380291 Rosa chinensis HOM05D000122 ORTHO05D000139 3.4e-06 55.1 96 33.3
RcHm_v2.0_Chr1g0381231 Rosa chinensis HOM05D000122 ORTHO05D000139 3.4e-06 55.1 89 33.7
RcHm_v2.0_Chr5g0048781 Rosa chinensis HOM05D000122 ORTHO05D000139 3.4e-06 55.1 83 37.3
RcHm_v2.0_Chr7g0213581 Rosa chinensis HOM05D000122 ORTHO05D011900 3.4e-06 55.1 91 35.2
AUR62004479 Chenopodium quinoa HOM05D000122 ORTHO05D000139 4.5e-06 54.7 81 37.0
MD07G1291700 Malus domestica HOM05D000122 ORTHO05D000139 5.9e-06 54.3 93 36.6
Prupe.4G109600 Prunus persica HOM05D000122 ORTHO05D025490 5.9e-06 54.3 94 33.0
Prupe.8G097600 Prunus persica HOM05D000122 ORTHO05D000386 7.7e-06 53.9 90 35.6


User provided reference genes

Program Settings