Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.4e-234 815.1 402 100.0
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.8e-227 791.2 402 96.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.8e-227 791.2 402 96.5
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.4e-227 790.4 402 96.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 8.4e-227 790.0 402 96.0
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.9e-226 788.9 402 96.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 5.4e-226 787.3 402 95.5
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 7.1e-226 786.9 402 95.5
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 6.6e-224 780.4 402 94.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 4.3e-223 777.7 402 93.8
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 5.6e-223 777.3 402 93.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 8.1e-222 773.5 402 93.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.3e-221 770.8 402 93.3
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 9.0e-221 770.0 402 92.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 92.3
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 9.9e-220 766.5 402 91.3
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.5
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 92.0
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.8e-219 764.6 402 91.8
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.8e-219 764.6 402 91.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 4.9e-219 764.2 402 91.3
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.0
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 91.0
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.0
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.2e-217 759.6 402 91.5
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 90.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.5
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 90.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.7e-217 758.4 402 90.5
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.7e-217 758.4 401 90.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 91.0
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 90.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.5
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.5
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.3e-216 755.4 402 90.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 91.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.3
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 91.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.0
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.0
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 8.7e-216 753.4 411 89.1
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 89.6
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.5e-215 752.7 402 90.5
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.0
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 89.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.0
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.0
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.6
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.1
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.1e-214 746.9 417 87.3
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 88.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.4e-213 746.1 402 88.1
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.6
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.6
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 3.4e-212 741.5 416 86.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.6e-212 740.3 402 87.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.1
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 9.9e-212 740.0 416 86.5
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 87.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.1
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 87.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 4.9e-211 737.6 429 84.4
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 87.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.6
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 86.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 86.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.7e-209 731.9 396 87.9
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.7e-209 731.9 438 82.4
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 87.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 87.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 87.3
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 85.6
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 86.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 86.8
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.6
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.6
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 85.8
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 86.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 6.7e-208 727.2 402 85.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 85.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 87.3
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 6.2e-206 720.7 401 86.3
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.4e-205 719.5 419 85.0
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.8e-204 714.1 402 86.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 5.8e-204 714.1 441 80.3
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 82.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.2e-202 708.4 402 84.8
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 84.3
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.6e-201 704.5 400 84.0
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.3e-200 703.0 402 85.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.4e-197 692.2 375 88.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 4.5e-196 688.0 402 84.6
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 7.9e-193 677.2 402 80.8
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.1e-191 673.3 402 80.3
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.3e-190 669.8 357 89.1
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 4.8e-190 667.9 402 78.6
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.1e-189 666.8 402 79.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.4e-189 665.6 361 89.8
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 7.7e-188 660.6 360 87.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.9e-187 658.7 402 81.3
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.5e-180 636.3 340 90.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.6e-180 635.6 401 74.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.5e-178 629.0 402 74.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.2e-177 626.7 334 90.4
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 4.4e-175 618.2 402 77.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.4e-175 618.2 402 72.6
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.2e-174 615.9 403 72.2
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.1e-173 613.6 403 72.2
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.1e-173 612.1 402 72.1
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.3e-165 584.7 401 69.1
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 6.5e-163 577.8 402 68.7
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.7e-156 554.3 403 65.8
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.0e-152 543.9 289 90.7
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.9e-147 525.8 403 68.5
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 3.3e-146 522.3 419 66.1
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 7.3e-138 494.6 402 64.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 2.5e-130 469.5 259 86.1
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.0e-123 446.0 394 54.6
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.9e-115 419.1 395 53.9
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 6.6e-115 418.3 276 76.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.1e-104 384.4 229 82.1
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.8e-104 383.6 219 86.8
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 3.1e-104 382.9 219 86.3
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 6.9e-104 381.7 219 85.4
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.8e-83 313.9 300 53.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.1e-80 304.7 160 90.6
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 6.9e-80 302.0 167 86.8
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 7.0e-56 222.2 116 91.4
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.8e-33 147.1 86 80.2
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 5.0e-30 136.3 351 28.8
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.1e-29 135.2 352 27.6
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.0e-15 87.8 47 85.1
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.3e-14 85.1 45 77.8
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 9.5e-13 79.0 316 24.7
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.6e-12 78.2 72 56.9
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 7.8e-07 59.3 353 20.7


User provided reference genes

Program Settings