Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.2e-189 666.8 463 100.0
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 6.6e-143 511.5 477 67.5
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 3.1e-140 502.7 465 66.9
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 1.9e-134 483.4 465 62.4
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.9e-134 483.4 465 62.6
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.4e-124 450.7 475 59.6
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 3.1e-124 449.5 464 66.4
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 9.9e-123 444.5 472 56.8
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 9.6e-118 427.9 464 55.0
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.3e-117 427.6 465 54.6
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 2.8e-117 426.4 467 56.3
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 3.1e-116 422.9 469 55.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 3.4e-115 419.5 463 54.2
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 7.6e-115 418.3 472 55.1
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.9e-114 416.4 472 54.2
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 4.9e-114 415.6 472 55.3
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 3.2e-113 412.9 466 56.9
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 9.3e-113 411.4 471 54.6
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 2.3e-111 406.8 470 53.8
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 5.1e-111 405.6 471 54.8
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.3e-109 401.0 475 52.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 2.8e-109 399.8 452 55.1
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.4e-108 397.5 464 51.1
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 2.4e-108 396.7 461 53.4
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 4.1e-108 396.0 509 51.9
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.2e-107 394.4 448 62.1
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.5e-107 394.0 527 48.0
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 4.5e-107 392.5 521 48.2
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 5.9e-107 392.1 473 52.4
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 7.6e-107 391.7 451 53.9
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 3.8e-106 389.4 449 54.3
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 6.5e-106 388.7 466 51.9
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 8.5e-106 388.3 462 56.1
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.1e-105 387.9 460 60.2
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 7.2e-105 385.2 450 51.3
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.2e-104 384.4 468 51.7
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.3e-103 380.2 467 52.2
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 3.0e-103 379.8 468 55.3
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 6.7e-103 378.6 459 52.3
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 2.5e-102 376.7 460 55.0
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.5e-102 376.7 463 50.5
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 3.3e-102 376.3 433 54.0
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 5.7e-102 375.6 454 50.7
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 5.7e-102 375.6 454 50.7
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 5.7e-102 375.6 466 49.4
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 2.2e-101 373.6 450 50.9
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 2.2e-101 373.6 464 56.0
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 6.3e-101 372.1 460 54.8
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 1.4e-100 370.9 436 52.5
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 6.9e-100 368.6 478 50.0
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 9.0e-100 368.2 449 49.0
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 9.0e-100 368.2 469 51.4
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.0e-99 367.1 453 51.2
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 2.6e-99 366.7 455 49.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 4.5e-99 365.9 466 49.6
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 5.9e-99 365.5 442 51.8
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 7.7e-99 365.2 475 50.5
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-98 364.4 458 49.1
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 3.8e-98 362.8 475 49.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 6.5e-98 362.1 439 52.2
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 1.1e-97 361.3 454 54.8
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 1.4e-97 360.9 454 50.0
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 5.5e-97 359.0 466 49.1
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 2.1e-96 357.1 464 47.0
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 2.1e-96 357.1 464 48.7
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.6e-96 356.3 467 49.9
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 6.1e-96 355.5 457 52.3
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 7.9e-96 355.1 464 48.9
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.4e-95 354.4 452 53.3
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 1.4e-95 354.4 443 49.2
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.3e-95 353.6 454 49.1
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 2.3e-95 353.6 462 54.3
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 3.9e-95 352.8 449 48.1
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.1e-94 351.3 467 47.8
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.1e-94 351.3 460 52.2
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.0e-94 350.5 464 49.1
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 2.6e-94 350.1 449 49.7
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 2.8e-93 346.7 466 56.9
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 3.7e-93 346.3 452 48.2
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 4.8e-93 345.9 461 48.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.8e-92 344.0 460 46.3
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 3.1e-92 343.2 397 56.9
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 6.9e-92 342.0 438 49.1
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 1.2e-91 341.3 473 46.5
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 4.5e-91 339.3 462 50.2
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 7.7e-91 338.6 463 60.5
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 4.2e-89 332.8 437 55.4
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 4.2e-89 332.8 462 46.8
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 4.7e-88 329.3 428 49.3
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.3e-87 327.0 475 42.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.0e-86 323.9 480 48.8
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 5.7e-86 322.4 464 46.1
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 9.7e-86 321.6 461 44.7
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.0e-83 313.9 463 43.6
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.6e-83 313.5 620 40.2
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 2.6e-83 313.5 464 45.9
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 3.5e-83 313.2 461 42.7
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.3e-82 311.2 446 43.0
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 3.8e-82 309.7 470 47.7
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 5.0e-82 309.3 464 45.7
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 2.6e-78 297.0 208 68.3
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 4.8e-77 292.7 403 48.6
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.0e-71 273.5 166 81.3
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 7.0e-68 262.3 465 38.3
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.2e-67 261.5 452 40.9
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 5.2e-63 246.1 145 81.4
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.8e-56 223.8 135 77.8
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 8.3e-53 212.2 192 59.9
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 4.3e-49 199.9 210 51.4
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 4.0e-47 193.4 182 51.6
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.7e-45 188.0 188 48.9
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 3.7e-45 186.8 190 49.5
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 7.8e-43 179.1 458 29.9
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 5.6e-41 172.9 112 74.1
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.2e-30 138.7 228 34.6
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 9.6e-25 119.0 182 37.4
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 3.6e-24 117.1 156 55.8
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 5.2e-23 113.2 58 93.1
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.8e-22 109.8 64 84.4
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 6.4e-21 106.3 85 63.5
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 3.2e-20 104.0 178 35.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 3.2e-20 104.0 190 32.6
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 8.7e-18 95.9 151 45.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.8e-16 90.9 59 76.3
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.6e-16 90.5 82 56.1


User provided reference genes

Program Settings