Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 9.7e-245 849.7 436 100.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 6.7e-214 747.3 440 88.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.3e-201 705.7 440 82.3
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 3.8e-201 704.9 440 81.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.5e-200 703.0 440 81.4
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.5e-200 703.0 440 81.4
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 5.7e-197 691.0 440 79.8
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.7e-196 689.5 436 79.8
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.6e-194 682.9 440 79.5
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.0e-194 682.6 402 83.6
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.5e-194 681.8 421 81.5
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.9e-194 681.0 402 83.3
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 3.8e-193 678.3 418 82.3
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 3.6e-191 671.8 425 79.8
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 3.6e-191 671.8 402 82.1
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.4e-190 669.8 399 84.7
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.4e-190 669.8 415 81.4
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 3.1e-190 668.7 442 76.2
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 6.8e-190 667.5 402 81.8
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.0e-189 666.0 400 81.5
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.6e-189 665.6 425 79.1
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 3.7e-188 661.8 420 79.0
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.4e-187 659.1 420 78.6
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.5e-186 655.2 422 78.2
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.6e-186 654.8 401 81.3
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.7e-185 652.9 400 81.2
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 3.0e-185 652.1 400 80.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 6.6e-185 651.0 398 80.9
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 6.6e-185 651.0 422 77.0
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 8.6e-185 650.6 430 77.4
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 5.6e-184 647.9 448 75.0
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.6e-184 647.9 424 76.7
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.2e-183 644.4 423 77.5
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 8.0e-183 644.0 423 77.5
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.1e-182 643.7 400 80.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.1e-182 643.7 402 79.4
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.4e-182 643.3 440 74.1
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.3e-182 642.5 418 76.3
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.1e-182 642.1 400 78.8
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 6.8e-182 641.0 422 75.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 6.8e-182 641.0 408 78.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 8.9e-182 640.6 413 78.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.6e-181 639.0 419 76.4
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.4e-181 638.6 419 75.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.3e-180 636.7 397 77.8
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.9e-180 635.6 415 76.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.7e-180 635.2 398 78.9
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 8.3e-180 634.0 399 77.4
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.4e-179 633.3 428 73.8
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.4e-179 633.3 417 77.2
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.2e-179 632.1 428 73.4
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.2e-179 632.1 428 73.8
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 5.4e-179 631.3 416 76.9
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.2e-178 630.2 436 74.5
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 6.0e-178 627.9 417 74.8
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 6.0e-178 627.9 409 76.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 7.8e-178 627.5 429 73.4
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 1.0e-177 627.1 409 76.5
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.0e-177 627.1 399 76.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.0e-177 627.1 399 76.7
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.3e-177 625.9 420 74.8
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 3.9e-177 625.2 417 74.8
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 5.1e-177 624.8 377 83.0
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 8.6e-177 624.0 399 77.2
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.1e-176 623.6 413 75.5
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 7.3e-176 620.9 458 70.3
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 9.5e-176 620.5 392 77.3
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.2e-175 620.2 392 78.6
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 4.7e-175 618.2 417 74.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.2e-174 614.8 417 74.3
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 6.8e-174 614.4 417 74.3
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.7e-172 609.8 417 73.9
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.7e-172 609.8 417 73.9
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.4e-172 607.8 423 72.8
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 3.2e-171 605.5 408 76.0
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.2e-170 603.6 354 84.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 4.6e-170 601.7 411 74.2
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-168 597.0 401 72.3
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 8.9e-166 587.4 411 72.5
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 7.6e-165 584.3 430 70.0
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 9.9e-165 583.9 419 69.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.1e-163 580.5 548 58.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.0e-161 573.9 415 71.3
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.3e-161 573.5 395 71.9
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.0e-161 572.4 387 70.3
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.9e-160 569.7 401 70.1
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.3e-160 568.5 394 74.4
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 8.1e-159 564.3 389 75.1
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 9.0e-158 560.8 372 77.7
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.2e-157 560.5 438 67.6
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.2e-157 560.5 420 67.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 5.8e-157 558.1 394 73.4
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 9.6e-152 540.8 331 79.5
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 2.1e-146 523.1 399 67.7
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.7e-146 522.7 389 66.1
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.8e-145 520.0 359 72.7
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 9.6e-144 514.2 344 71.2
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.8e-142 510.0 378 65.9
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.5e-141 506.9 325 79.4
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.4e-139 500.4 396 61.1
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.2e-139 499.2 338 71.3
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.0e-137 492.7 381 62.5
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.7e-132 476.9 426 62.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 9.7e-128 461.1 361 68.7
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 7.2e-123 444.9 334 66.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.0e-121 439.5 317 71.3
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.7e-113 411.8 263 77.9
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 2.0e-112 410.2 377 52.8
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.2e-111 404.8 309 69.3
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 7.2e-107 391.7 277 70.0
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 9.7e-104 381.3 323 62.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 4.1e-102 375.9 316 60.1
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 8.5e-100 368.2 407 47.7
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.8e-94 350.5 228 75.0
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.2e-93 347.8 414 46.1
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 2.4e-86 323.6 399 44.1
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 7.8e-69 265.4 225 64.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 8.1e-66 255.4 170 69.4
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.5e-64 251.1 261 50.6
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.1e-60 236.1 169 74.0
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 4.1e-54 216.5 172 64.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 5.4e-54 216.1 129 81.4
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.5e-53 213.4 335 37.0
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.3e-52 210.7 122 83.6
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-44 182.2 164 54.9
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.6e-42 176.8 142 65.5
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 3.1e-33 147.1 115 67.8
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.7e-29 134.0 108 66.7
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.1e-26 124.4 83 71.1
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.1e-26 124.4 413 28.8
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.1e-22 112.1 95 64.2
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.7e-19 99.8 64 67.2
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 6.9e-17 92.8 114 49.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.5e-16 90.1 80 60.0
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.7e-13 80.9 49 71.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.7e-11 73.2 62 58.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 9.0e-09 65.9 66 51.5
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.3e-07 62.0 46 60.9
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 3.8e-07 60.5 44 59.1
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 8.5e-07 59.3 49 59.2
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.2e-06 57.4 61 55.7
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 9.4e-06 55.8 48 58.3


User provided reference genes

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