Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1674.4 816 100.0
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1464.1 820 85.9
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1399.4 817 81.2
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1394.8 817 80.4
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1394.4 817 80.3
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1391.3 817 80.2
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1370.1 839 77.8
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1304.3 816 75.9
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1271.5 816 73.7
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1241.5 817 69.9
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1241.5 818 71.6
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1231.5 817 70.6
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1228.8 817 72.0
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1209.9 817 69.3
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1204.5 820 68.8
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1202.2 816 68.5
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1194.9 818 68.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1192.9 817 68.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1192.6 817 68.3
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1187.9 817 68.2
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1174.1 861 64.8
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1162.5 812 67.0
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1156.7 816 66.8
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1152.5 784 69.8
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1151.3 816 66.5
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1146.7 806 68.9
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1141.3 817 65.4
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1128.6 755 70.2
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1126.3 819 65.0
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1125.5 788 66.2
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1118.2 817 63.4
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1104.0 817 63.2
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1103.6 818 63.6
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1102.8 785 66.8
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1099.0 817 65.1
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1098.6 713 71.9
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1095.9 819 63.2
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1089.7 819 63.2
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1086.6 819 63.2
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1085.9 817 63.6
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1082.0 818 63.2
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 5.0e-311 1070.8 817 62.7
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 3.7e-306 1054.7 815 61.1
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 1.4e-305 1052.7 821 60.9
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 7.0e-305 1050.4 821 62.1
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.6e-304 1049.3 817 60.6
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 3.6e-301 1038.1 817 59.6
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 3.6e-301 1038.1 816 58.9
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 1.8e-300 1035.8 824 60.8
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 4.0e-300 1034.6 792 63.1
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 6.8e-300 1033.9 820 60.4
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 6.8e-300 1033.9 820 60.4
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 1.2e-299 1033.1 824 60.9
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 4.4e-299 1031.2 817 58.9
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 2.4e-297 1025.4 817 59.4
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 9.1e-297 1023.5 822 60.5
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 2.9e-295 1018.5 819 60.4
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 2.9e-295 1018.5 814 59.3
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 1.1e-294 1016.5 822 59.2
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 1.0e-292 1010.0 814 58.2
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.2e-290 1002.3 816 57.2
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 2.8e-290 1001.9 818 59.0
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 4.9e-290 1001.1 819 58.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.4e-289 999.6 816 57.7
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 1.4e-289 999.6 817 57.9
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.4e-289 997.7 757 62.9
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 9.2e-289 996.9 825 59.3
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 1.2e-288 996.5 818 58.8
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 5.9e-288 994.2 790 59.4
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 2.3e-287 992.3 784 61.5
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 3.8e-287 991.5 819 57.8
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 6.4e-282 974.2 615 74.0
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.0e-276 956.8 722 63.3
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 5.2e-276 954.5 818 55.7
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 5.8e-275 951.0 814 56.6
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.9e-273 946.0 747 59.0
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.0e-271 940.3 816 57.7
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 3.3e-270 935.3 818 54.4
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 8.1e-269 930.6 827 54.2
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 1.2e-267 926.8 636 68.4
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 5.6e-262 907.9 829 54.4
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 9.5e-262 907.1 826 55.3
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 4.1e-257 891.7 842 51.4
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 5.4e-257 891.3 824 53.2
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 9.6e-254 880.6 820 53.3
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.1e-252 875.5 626 66.1
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.3e-247 860.1 814 51.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 2.1e-240 836.3 814 51.5
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 8.7e-215 751.1 792 51.1
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 1.4e-207 727.2 488 68.4
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.8e-204 716.8 649 52.9
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 8.0e-192 674.9 850 41.3
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 6.7e-191 671.8 583 54.5
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.8e-172 610.5 438 63.5
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.9e-161 573.9 443 62.8
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.1e-145 521.5 510 51.2
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.3e-137 493.0 340 69.4
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.4e-135 488.0 379 60.7
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.2e-134 485.0 415 54.7
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.1e-128 464.2 275 80.7
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 2.0e-118 431.0 944 29.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.0e-101 375.6 306 57.8
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 6.3e-64 250.0 219 55.3
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.5e-62 243.8 168 69.6
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 1.1e-47 196.1 180 47.2
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 3.5e-46 191.0 125 74.4
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 3.7e-40 171.0 158 49.4
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.3e-37 162.5 154 55.2
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 3.6e-35 154.5 105 69.5
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 2.0e-33 148.7 134 53.7
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.7e-30 138.3 109 55.0
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.9e-28 132.1 147 46.9
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 2.5e-28 131.7 147 46.9
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.6e-27 129.0 157 46.5
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 9.9e-25 119.8 222 33.8
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 9.6e-20 103.2 86 60.5
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 4.0e-18 97.8 95 49.5
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.1e-14 85.5 50 74.0
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.5e-12 79.3 52 71.2
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 2.8e-11 75.1 42 73.8
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 8.1e-11 73.6 61 55.7
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 6.0e-06 57.4 287 23.3


User provided reference genes

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