Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 4.7e-183 644.8 437 100.0
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.1e-159 566.2 437 87.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 4.3e-152 542.0 439 87.5
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 7.4e-144 514.6 264 90.5
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.4e-142 510.4 261 90.8
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 2.4e-142 509.6 263 89.0
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 4.0e-142 508.8 262 90.1
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.3e-142 508.4 264 89.0
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 3.4e-141 505.8 261 88.9
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.4e-141 505.8 261 89.7
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.9e-140 501.9 261 89.3
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 4.9e-140 501.9 261 89.3
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.9e-140 501.9 263 87.1
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 6.5e-140 501.5 263 86.7
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.1e-139 500.7 405 75.6
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.2e-139 499.2 403 74.4
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 4.2e-139 498.8 403 85.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 7.1e-139 498.0 261 87.7
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 4.6e-138 495.4 256 86.3
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.3e-137 493.0 260 88.8
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 3.0e-137 492.7 264 85.2
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 5.1e-137 491.9 261 87.4
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 2.5e-136 489.6 261 87.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.3e-136 489.2 261 86.2
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.7e-136 488.4 258 84.9
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.3e-135 487.3 262 85.9
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.6e-135 486.9 262 83.2
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.6e-135 486.9 261 86.2
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.6e-135 486.9 260 85.4
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.2e-135 486.5 261 85.8
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.2e-135 486.5 256 86.7
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.2e-135 486.5 262 83.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.8e-135 486.1 262 85.5
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.3e-135 485.0 262 83.2
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 6.3e-135 485.0 264 84.8
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.1e-134 484.2 261 86.2
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 2.4e-134 483.0 256 85.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 3.1e-134 482.6 260 83.5
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 4.1e-134 482.3 286 79.4
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 4.1e-134 482.3 264 84.1
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 5.3e-134 481.9 436 64.9
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.3e-134 481.9 264 84.1
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 2.6e-133 479.6 262 84.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 3.4e-133 479.2 262 83.6
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.4e-133 479.2 259 83.4
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 4.5e-133 478.8 264 82.6
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.3e-132 477.2 262 84.0
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.2e-132 476.5 264 83.0
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.2e-132 476.5 262 83.2
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 3.8e-132 475.7 262 82.4
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 3.8e-132 475.7 256 84.4
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 5.0e-132 475.3 262 82.4
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.0e-132 475.3 262 83.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 8.5e-132 474.6 263 82.1
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.5e-132 474.6 256 83.2
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.1e-131 474.2 264 82.6
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.9e-131 473.4 264 82.6
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.5e-131 473.0 259 84.2
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.2e-131 472.2 254 83.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 4.2e-131 472.2 262 83.2
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 4.2e-131 472.2 256 84.0
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 5.5e-131 471.9 240 90.4
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.5e-131 471.9 255 82.0
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 7.2e-131 471.5 255 82.4
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 9.4e-131 471.1 264 82.6
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.2e-130 470.7 254 84.3
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.6e-130 470.3 253 85.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.6e-130 470.3 256 83.6
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.7e-130 469.5 264 82.2
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 2.7e-130 469.5 261 83.9
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.6e-130 469.2 262 83.6
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.4e-129 467.2 258 83.3
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.4e-129 467.2 263 82.5
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 2.3e-129 466.5 264 81.8
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 8.8e-129 464.5 260 83.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.1e-128 464.2 264 81.4
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.3e-128 462.6 261 80.5
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 4.3e-128 462.2 264 80.7
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 5.7e-128 461.8 259 81.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 7.4e-128 461.5 266 81.2
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 7.4e-128 461.5 262 82.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 7.4e-128 461.5 259 81.5
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.1e-126 457.6 256 82.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.1e-126 457.6 252 82.9
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 6.9e-126 454.9 263 77.9
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.0e-125 453.4 262 80.9
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.6e-125 453.0 263 80.6
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.4e-125 452.6 261 79.7
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 4.5e-125 452.2 261 78.2
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.3e-124 450.7 256 80.5
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.7e-124 450.3 256 79.7
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 6.5e-124 448.4 253 81.4
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 6.5e-124 448.4 260 78.1
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.5e-124 448.0 256 80.9
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.5e-123 446.4 262 80.2
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 9.4e-123 444.5 264 78.8
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 1.2e-122 444.1 240 85.0
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.4e-121 440.7 266 75.9
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 3.0e-121 439.5 256 77.0
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 8.8e-121 438.0 262 78.6
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.5e-120 437.2 260 76.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-119 434.1 253 76.7
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.2e-119 433.3 322 65.8
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 3.7e-119 432.6 261 78.2
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.4e-118 430.6 258 78.3
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.0e-116 422.2 258 76.0
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.2e-115 419.5 264 76.5
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 5.5e-115 418.7 299 66.6
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.3e-112 409.5 264 73.5
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 4.1e-110 402.5 212 87.7
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 4.1e-110 402.5 261 72.0
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.6e-109 399.8 263 74.5
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.5e-107 394.0 223 81.6
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 2.6e-104 383.3 202 84.2
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 9.7e-104 381.3 268 68.3
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.7e-101 373.2 211 78.2
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 5.5e-99 365.5 183 91.3
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.4e-94 350.9 264 64.0
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 9.1e-94 348.2 264 62.5
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 4.5e-93 345.9 266 59.8
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 9.5e-91 338.2 176 90.3
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.5e-88 330.9 173 90.2
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.5e-88 330.9 173 90.2
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 2.2e-87 327.0 333 81.7
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.3e-87 325.5 253 63.2
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 5.0e-84 315.8 243 62.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 8.6e-84 315.1 173 84.4
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.3e-83 313.2 249 61.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 9.5e-83 311.6 172 83.1
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.1e-82 308.9 174 83.3
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.4e-80 303.1 171 83.0
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.5e-75 287.7 221 64.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.9e-75 287.3 242 60.3
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 3.2e-70 270.0 172 74.4
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.3e-68 263.8 263 53.6
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.4e-64 249.6 263 50.2
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.2e-63 247.3 193 61.1
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.9e-62 244.2 191 62.3
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 5.4e-62 242.7 242 50.4
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.5e-56 224.6 180 64.4
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 3.2e-54 216.9 178 57.3
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 7.1e-54 215.7 240 51.2
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.0e-52 211.8 128 79.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 3.6e-50 203.4 222 47.7
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.0e-49 199.9 115 80.9
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.0e-49 198.7 111 82.9
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 5.1e-44 183.0 170 54.1
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 4.3e-43 179.9 253 41.9
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 5.8e-40 169.5 128 62.5
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 7.6e-40 169.1 124 62.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 5.1e-36 156.4 91 74.7
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.6e-29 134.8 81 72.8
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-17 95.1 49 81.6
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-17 95.1 49 81.6
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.3e-15 88.6 54 72.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.0e-07 62.4 165 27.9
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 6.5e-07 59.7 141 29.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 8.5e-07 59.3 113 34.5
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.9e-06 58.2 196 29.1
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 4.2e-06 57.0 168 29.2
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.5e-06 56.6 158 27.8
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.5e-06 56.6 158 27.8


User provided reference genes

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