Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 8.0e-70 267.3 170 100.0
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 9.5e-47 190.7 171 64.9
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 2.1e-46 189.5 172 63.4
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 1.7e-24 116.7 166 50.6
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 5.1e-24 115.2 167 46.7
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.1e-23 114.0 178 47.8
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 1.5e-23 113.6 172 47.7
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 2.8e-22 109.4 171 46.2
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.8e-21 106.7 110 56.4
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 4.9e-19 98.6 169 42.6
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 4.6e-17 92.0 174 41.4
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 4.6e-17 92.0 172 40.7
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 3.9e-16 89.0 171 40.4
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 8.7e-16 87.8 102 51.0
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 1.1e-15 87.4 107 47.7
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 1.9e-15 86.7 104 48.1
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 2.5e-15 86.3 154 41.6
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 5.6e-15 85.1 166 38.6
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 1.3e-14 84.0 159 35.2
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 1.3e-14 84.0 160 38.1
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 3.6e-14 82.4 159 35.8
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.1e-13 80.9 168 35.7
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 1.8e-13 80.1 159 34.6
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 2.4e-13 79.7 108 50.0
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 1.2e-12 77.4 96 47.9
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 1.5e-12 77.0 171 37.4
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 2.0e-12 76.6 107 45.8
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 2.6e-12 76.3 102 46.1
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 2.6e-12 76.3 108 47.2
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 5.8e-12 75.1 106 45.3
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 7.6e-12 74.7 163 36.8
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 7.6e-12 74.7 156 38.5
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 7.6e-12 74.7 97 46.4
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 7.6e-12 74.7 97 46.4
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 7.6e-12 74.7 97 46.4
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 1.7e-11 73.6 95 45.3
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 2.9e-11 72.8 184 38.6
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 3.8e-11 72.4 106 43.4
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 4.9e-11 72.0 101 46.5
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 8.4e-11 71.2 108 44.4
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 1.1e-10 70.9 98 48.0
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 1.1e-10 70.9 104 43.3
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 1.1e-10 70.9 95 46.3
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 1.1e-10 70.9 97 45.4
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 1.9e-10 70.1 111 38.7
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 2.4e-10 69.7 98 40.8
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 2.4e-10 69.7 98 41.8
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 3.2e-10 69.3 103 41.7
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 4.2e-10 68.9 98 40.8
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 5.4e-10 68.6 97 42.3
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 9.3e-10 67.8 105 41.9
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 1.2e-09 67.4 104 42.3
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 1.2e-09 67.4 104 42.3
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 1.6e-09 67.0 104 41.3
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 1.6e-09 67.0 104 41.3
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 2.1e-09 66.6 151 32.5
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 2.7e-09 66.2 192 33.9
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 3.5e-09 65.9 95 45.3
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 6.0e-09 65.1 104 41.3
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 1.8e-08 63.5 98 41.8
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 1.8e-08 63.5 110 35.5
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 2.3e-08 63.2 93 41.9
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 5.1e-08 62.0 101 42.6
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 6.7e-08 61.6 103 39.8
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 8.7e-08 61.2 96 37.5
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 1.5e-07 60.5 104 41.3
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 1.5e-07 60.5 100 41.0
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 1.5e-07 60.5 102 39.2
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 1.9e-07 60.1 100 39.0
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 3.3e-07 59.3 96 36.5
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 4.3e-07 58.9 100 40.0
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 5.6e-07 58.5 112 41.1
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 1.6e-06 57.0 89 42.7
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 4.8e-06 55.5 103 38.8


User provided reference genes

Program Settings