Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.3e-125 452.2 225 100.0
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.2e-111 405.2 226 89.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.7e-110 401.4 226 89.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 7.0e-106 387.5 227 86.3
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.0e-105 386.0 227 85.9
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.5e-105 385.2 227 85.9
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.0e-104 383.6 227 85.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-104 383.3 227 85.5
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.5e-103 379.8 227 85.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.8e-101 372.9 226 81.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.5e-100 369.8 225 79.6
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.6e-100 369.0 226 80.5
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.1e-98 363.6 229 79.0
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.4e-98 362.5 226 78.8
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 9.2e-98 360.5 227 80.6
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.0e-97 359.4 226 77.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.9e-96 355.5 226 75.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 6.6e-96 354.4 226 77.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.6e-95 351.3 226 75.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.7e-94 348.2 226 75.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 6.2e-94 347.8 226 75.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.6e-92 342.4 227 76.7
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.9e-91 339.0 226 73.9
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 8.3e-91 337.4 229 74.2
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.1e-90 337.0 230 75.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.1e-90 335.1 226 73.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.4e-90 334.7 228 70.2
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 9.2e-90 334.0 228 70.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 9.2e-90 334.0 228 70.6
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.0e-89 332.8 227 73.1
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.5e-89 332.0 226 74.3
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.3e-88 330.1 233 73.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.9e-88 328.6 227 74.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.5e-87 326.6 227 72.7
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 5.6e-87 324.7 230 74.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.2e-86 323.6 231 73.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.6e-86 323.2 229 71.6
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.8e-86 322.4 226 70.8
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.2e-86 321.2 234 72.2
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.4e-85 320.1 228 70.6
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.3e-85 319.3 219 70.3
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.4e-84 315.1 228 71.1
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 5.8e-84 314.7 226 68.1
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 9.8e-84 313.9 229 69.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.7e-83 313.2 226 71.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.7e-83 312.0 226 72.1
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 8.3e-83 310.8 228 72.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.1e-82 310.5 229 70.7
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.1e-82 307.8 227 70.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.3e-80 303.5 223 65.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.3e-80 302.8 230 66.1
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-80 302.0 227 69.2
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 6.6e-80 301.2 219 67.1
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.5e-79 299.3 232 64.7
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.5e-79 299.3 231 68.0
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.3e-79 298.5 227 66.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.2e-78 297.0 229 65.9
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-78 296.2 236 66.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 6.2e-78 294.7 231 71.0
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.1e-77 293.9 232 65.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.8e-77 293.1 227 66.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.8e-77 293.1 228 67.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.0e-77 292.0 230 65.7
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.2e-76 290.4 226 66.4
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.4e-76 288.5 226 65.0
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.4e-76 288.5 226 65.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 7.6e-76 287.7 230 64.3
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.7e-75 286.6 226 66.8
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.4e-75 284.3 226 64.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.4e-74 283.5 223 65.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.9e-74 283.1 228 66.2
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.4e-74 282.7 218 65.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.2e-74 282.3 219 64.8
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.2e-74 282.3 227 65.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.2e-74 282.3 227 64.3
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 9.2e-74 280.8 232 63.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 9.2e-74 280.8 227 65.2
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.6e-73 280.0 229 62.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-73 280.0 229 65.5
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.1e-73 279.6 218 64.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.0e-72 275.8 219 62.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.1e-72 275.0 228 64.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-71 273.9 227 62.1
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.5e-71 272.7 229 64.6
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.3e-71 272.3 228 61.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.6e-70 270.0 227 61.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.6e-70 270.0 230 61.3
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.1e-70 269.6 228 60.5
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.8e-70 269.2 218 62.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.6e-70 268.9 189 71.4
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 4.7e-70 268.5 229 61.6
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.8e-69 266.5 229 60.3
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.2e-69 265.0 243 57.2
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.0e-68 263.1 219 60.7
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 2.0e-68 263.1 218 61.0
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.6e-68 262.7 215 62.8
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.6e-68 262.7 218 61.0
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 7.6e-68 261.2 218 63.8
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.4e-67 258.1 168 73.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 4.2e-66 255.4 218 61.0
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 5.4e-66 255.0 219 61.2
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.4e-66 255.0 218 57.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-65 253.8 226 58.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.6e-65 253.4 226 60.2
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.6e-65 253.4 226 60.2
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.1e-65 253.1 187 69.0
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.7e-65 252.7 227 61.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 3.9e-64 248.8 225 56.0
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 3.9e-64 248.8 225 61.3
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 4.3e-63 245.4 219 56.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 5.6e-63 245.0 226 59.7
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 9.6e-63 244.2 228 57.0
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 9.6e-63 244.2 228 56.6
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 9.6e-63 244.2 228 57.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 4.8e-62 241.9 228 56.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.4e-61 240.4 221 55.2
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-61 240.4 227 59.0
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.4e-61 240.4 260 54.2
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.8e-61 240.0 226 58.4
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 9.0e-61 237.7 223 53.8
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-60 237.3 224 56.7
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.5e-60 236.9 223 56.5
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.4e-60 235.3 226 58.0
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 4.4e-60 235.3 223 55.2
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 7.6e-60 234.6 242 53.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.6e-60 234.6 148 74.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 5.4e-58 228.4 227 55.9
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.3e-58 227.6 229 52.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.6e-57 226.9 234 52.6
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-57 226.5 217 55.3
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 7.9e-57 224.6 223 51.1
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.3e-56 223.8 228 55.7
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.3e-56 223.0 235 51.9
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-55 220.7 245 49.8
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.5e-55 219.5 203 56.2
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.5e-55 219.5 226 54.0
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.3e-55 219.2 140 72.9
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 2.8e-54 216.1 204 55.4
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.1e-54 214.5 221 51.1
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.4e-53 213.8 221 50.2
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.8e-53 213.4 220 50.0
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.8e-53 213.4 227 50.7
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.0e-53 212.2 221 51.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 5.3e-53 211.8 211 51.7
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 9.0e-53 211.1 220 49.1
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.2e-52 210.7 226 49.1
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.4e-52 209.1 220 51.4
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 5.8e-52 208.4 184 54.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-50 203.8 229 49.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.9e-50 203.4 140 65.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.1e-49 199.9 206 49.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.5e-49 199.1 230 55.7
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.5e-49 199.1 208 48.6
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.6e-49 198.7 169 55.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.0e-48 197.6 280 45.4
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 3.3e-47 192.6 164 61.6
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 7.4e-47 191.4 225 47.1
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.1e-45 186.0 230 53.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.0e-45 184.5 219 46.6
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 9.0e-45 184.5 162 57.4
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.5e-44 183.7 132 59.8
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.0e-44 183.3 129 59.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 5.8e-44 181.8 123 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.7e-43 180.3 223 46.2
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.7e-43 180.3 217 46.5
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 4.2e-42 175.6 168 51.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 7.4e-39 164.9 107 66.4
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.1e-38 163.3 126 57.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.8e-38 162.9 216 47.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 4.8e-38 162.2 136 58.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-35 153.7 232 44.0
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-35 153.7 232 44.0
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 5.5e-34 148.7 227 44.1
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.3e-32 144.1 82 82.9
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.4e-29 133.3 88 71.6
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.5e-27 125.2 117 61.5
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 7.7e-20 101.7 60 71.7
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.0e-16 89.7 51 70.6
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 3.3e-15 86.3 52 73.1
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.2e-06 57.0 135 34.1
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 6.3e-06 55.5 110 37.3
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 8.2e-06 55.1 110 35.5


User provided reference genes

Program Settings