Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 8.0e-106 387.1 196 100.0
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 5.3e-25 118.6 207 41.5
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 6.9e-25 118.2 204 45.1
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 2.0e-24 116.7 144 54.2
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 2.0e-24 116.7 144 54.2
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 3.4e-24 115.9 152 50.0
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 1.0e-23 114.4 182 46.7
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 1.0e-23 114.4 166 46.4
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 6.5e-23 111.7 180 46.7
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 1.9e-22 110.2 185 47.0
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 3.2e-22 109.4 168 48.2
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 4.2e-22 109.0 146 47.3
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 2.7e-21 106.3 151 49.0
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 6.7e-20 101.7 162 46.9
CiPaw.12G137700 Carya illinoinensis HOM05D005849 ORTHO05D004704 8.7e-20 101.3 189 44.4
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 1.1e-19 100.9 109 58.7
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 2.5e-19 99.8 172 41.9
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 5.7e-19 98.6 148 47.3
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.3e-18 97.4 124 51.6
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.6e-18 97.1 172 41.3
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 1.8e-17 93.6 134 46.3
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.1e-17 92.8 145 45.5
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 3.1e-17 92.8 163 42.9
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 4.1e-17 92.4 182 38.5
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.1e-17 92.4 146 47.3
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.1e-17 92.4 176 39.8
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 5.3e-17 92.0 173 39.3
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 5.3e-17 92.0 176 39.8
Cfa020199 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.2e-16 90.9 190 42.6
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.2e-16 90.9 189 41.3
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 3.4e-16 89.4 166 45.2
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 1.3e-15 87.4 128 46.1
Cpa.g.sc12.153 Carica papaya HOM05D005849 ORTHO05D004704 2.2e-15 86.7 156 45.5
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 2.9e-15 86.3 169 42.6
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 2.9e-15 86.3 155 41.3
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 3.8e-15 85.9 152 44.7
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 5.0e-15 85.5 173 42.8
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 6.5e-15 85.1 146 44.5
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 8.5e-15 84.7 197 38.6
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 8.5e-15 84.7 169 41.4
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 1.4e-14 84.0 156 40.4
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 1.4e-14 84.0 104 51.0
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 4.2e-14 82.4 127 48.0
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 7.2e-14 81.6 130 45.4
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 9.4e-14 81.3 165 40.6
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 9.4e-14 81.3 174 39.7
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 1.2e-13 80.9 194 37.6
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.6e-13 80.5 83 56.6
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 2.1e-13 80.1 167 37.7
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 6.1e-13 78.6 76 60.5
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 6.1e-13 78.6 199 36.7
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 1.0e-12 77.8 140 41.4
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 1.0e-12 77.8 165 41.2
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.4e-12 77.4 166 36.7
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.4e-12 77.4 118 45.8
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 1.4e-12 77.4 77 57.1
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.8e-12 77.0 208 35.6
Dinv10326 Davidia involucrata HOM05D005849 ORTHO05D004704 2.3e-12 76.6 129 42.6
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 2.3e-12 76.6 146 39.7
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 3.0e-12 76.3 165 35.8
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 3.9e-12 75.9 208 36.1
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 5.1e-12 75.5 152 36.2
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 5.1e-12 75.5 145 39.3
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.7e-12 75.1 119 47.1
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 8.8e-12 74.7 142 38.7
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.1e-11 74.3 138 44.2
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 1.1e-11 74.3 128 43.8
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 1.1e-11 74.3 128 43.8
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.5e-11 73.9 183 38.8
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 3.3e-11 72.8 72 58.3
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 4.3e-11 72.4 145 37.9
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 5.7e-11 72.0 130 40.0
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 5.7e-11 72.0 114 45.6
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 7.4e-11 71.6 120 44.2
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 2.2e-10 70.1 137 38.0
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 2.8e-10 69.7 155 38.7
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 3.7e-10 69.3 182 36.3
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 4.8e-10 68.9 158 36.1
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 4.8e-10 68.9 111 42.3
Lalb_Chr15g0082031 Lupinus albus HOM05D005849 ORTHO05D004704 4.8e-10 68.9 108 45.4
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 8.2e-10 68.2 115 42.6
Glyma.14G013800 Glycine max HOM05D014115 ORTHO05D004704 1.1e-09 67.8 87 48.3
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.4e-09 67.4 154 37.0
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.4e-09 67.4 153 37.9
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 1.8e-09 67.0 182 35.7
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 1.8e-09 67.0 153 37.9
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.8e-09 67.0 153 37.9
Glyma.02G300100 Glycine max HOM05D014115 ORTHO05D004704 1.8e-09 67.0 123 40.7
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 1.8e-09 67.0 117 43.6
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 2.4e-09 66.6 153 37.9
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 3.1e-09 66.2 104 43.3
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 4.1e-09 65.9 128 43.0
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 5.3e-09 65.5 183 32.2
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 6.9e-09 65.1 123 39.8
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 6.9e-09 65.1 130 40.0
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.5e-08 63.9 123 42.3
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.5e-08 63.9 153 36.6
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 1.5e-08 63.9 72 52.8
Phvul.008G278800 Phaseolus vulgaris HOM05D014115 ORTHO05D004704 2.6e-08 63.2 130 36.2
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 3.4e-08 62.8 144 38.9
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 5.9e-08 62.0 88 46.6
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 5.9e-08 62.0 109 42.2
Atru.chr2.3682 Acer truncatum HOM05D005849 ORTHO05D004704 7.7e-08 61.6 113 40.7
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 7.7e-08 61.6 131 38.9
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 1.0e-07 61.2 143 34.3
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 1.0e-07 61.2 104 43.3
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 1.7e-07 60.5 178 32.6
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 2.2e-07 60.1 176 34.1
Medtr5g095710 Medicago truncatula HOM05D014115 ORTHO05D004704 5.0e-07 58.9 69 50.7
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 6.5e-07 58.5 79 51.9
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.1e-06 57.8 77 45.5
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 1.4e-06 57.4 115 44.3
MSTRG.6993 Avicennia marina HOM05D064321 ORTHO05D038961 1.4e-06 57.4 110 39.1
Oeu049391.1 Olea europaea HOM05D005849 ORTHO05D004704 1.4e-06 57.4 105 41.9
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 1.4e-06 57.4 122 41.0
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 1.9e-06 57.0 127 39.4
Psat5g169040 Pisum sativum HOM05D014115 ORTHO05D004704 2.5e-06 56.6 79 44.3
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 3.2e-06 56.2 142 36.6
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 4.2e-06 55.8 122 40.2
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 7.2e-06 55.1 175 34.9
Eucgr.F03692 Eucalyptus grandis HOM05D005849 ORTHO05D004704 7.2e-06 55.1 103 37.9


User provided reference genes

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