Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 7.0e-112 407.5 240 100.0
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 1.1e-61 240.7 241 63.1
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 3.2e-32 142.9 243 51.4
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 9.3e-32 141.4 243 48.1
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 3.9e-30 136.0 264 45.8
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 2.0e-26 123.6 240 45.4
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 7.2e-24 115.2 195 48.7
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 3.6e-23 112.8 242 39.7
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 3.9e-22 109.4 238 38.7
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 1.1e-21 107.8 238 37.0
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 4.3e-21 105.9 245 37.1
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 7.4e-21 105.1 245 44.5
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 2.8e-20 103.2 266 40.2
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 2.8e-20 103.2 217 39.2
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 3.7e-20 102.8 269 39.0
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 8.2e-20 101.7 250 38.8
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 1.8e-19 100.5 266 35.7
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 1.8e-19 100.5 263 36.9
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 1.8e-19 100.5 229 35.8
Sabra16G0239800 Salix brachista HOM05D005871 ORTHO05D003654 3.1e-19 99.8 244 36.1
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 4.1e-19 99.4 266 35.7
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 5.3e-19 99.0 278 34.2
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 6.9e-19 98.6 231 34.2
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 1.5e-18 97.4 235 41.3
TPR.G8596 Trifolium pratense HOM05D005871 ORTHO05D003654 1.0e-17 94.7 255 40.4
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.3e-17 94.4 245 37.1
Psat0s4683g0040 Pisum sativum HOM05D005871 ORTHO05D003654 2.9e-17 93.2 247 36.8
Lj6g0021470 Lotus japonicus HOM05D005871 ORTHO05D003654 3.8e-17 92.8 251 34.7
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 5.0e-17 92.4 251 37.8
TPR.G35473 Trifolium pratense HOM05D005871 ORTHO05D003654 5.0e-17 92.4 234 36.3
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.5e-17 92.0 250 42.0
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 6.5e-17 92.0 246 33.7
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 1.1e-16 91.3 267 34.8
Medtr5g095540 Medicago truncatula HOM05D005871 ORTHO05D003654 5.5e-16 89.0 279 36.6
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 7.2e-16 88.6 208 36.1
Medtr5g095630 Medicago truncatula HOM05D005871 ORTHO05D003654 1.6e-15 87.4 255 39.2
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 4.7e-15 85.9 201 36.3
CANSAT11G0434 Cannabis sativa HOM05D005871 ORTHO05D003654 7.9e-15 85.1 80 58.8
Sed0014857 Sechium edule HOM05D005871 ORTHO05D003654 1.0e-14 84.7 221 38.9
VMungo0540G0718 Vigna mungo HOM05D005871 ORTHO05D003654 1.0e-14 84.7 241 32.8
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.0e-14 83.2 212 34.4
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.9e-14 82.8 213 32.9
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.1e-14 82.4 255 35.7
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 5.1e-14 82.4 212 34.0
Medtr3g058890 Medicago truncatula HOM05D005871 ORTHO05D003654 1.1e-13 81.3 173 39.9
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 1.5e-13 80.9 242 33.5
CiPaw.09G107300 Carya illinoinensis HOM05D005871 ORTHO05D003654 2.6e-13 80.1 238 36.6
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 2.6e-13 80.1 221 32.6
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 3.3e-13 79.7 239 38.1
PGR083G2866 Punica granatum HOM05D005871 ORTHO05D003654 3.3e-13 79.7 263 34.6
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 7.4e-13 78.6 241 38.2
Psat2g007960 Pisum sativum HOM05D005871 ORTHO05D003654 9.7e-13 78.2 239 43.5
QL05p068166 Quercus lobata HOM05D005871 ORTHO05D003654 9.7e-13 78.2 214 34.1
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 9.7e-13 78.2 220 36.4
Phvul.006G140600 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 1.3e-12 77.8 245 33.5
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 2.2e-12 77.0 239 35.1
TWI38G1492 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 2.8e-12 76.6 230 33.5
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 4.8e-12 75.9 221 34.8
TPR.G8607 Trifolium pratense HOM05D005871 ORTHO05D003654 4.8e-12 75.9 260 36.2
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 6.3e-12 75.5 196 35.7
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 8.2e-12 75.1 244 32.0
Ah.09g234010 Amaranthus hybridus HOM05D005871 ORTHO05D003654 1.1e-11 74.7 211 35.1
FAN02G3820 Fragaria x ananassa HOM05D005871 ORTHO05D003654 1.1e-11 74.7 211 32.7
Atru.chr2.3672 Acer truncatum HOM05D005871 ORTHO05D003654 1.8e-11 73.9 288 33.7
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 1.8e-11 73.9 224 32.1
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 3.1e-11 73.2 226 30.5
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 4.1e-11 72.8 240 35.8
Ah.04g166520 Amaranthus hybridus HOM05D005871 ORTHO05D003654 5.3e-11 72.4 229 38.9
Carub.0003s1247 Capsella rubella HOM05D010616 ORTHO05D003654 5.3e-11 72.4 235 34.9
Psat2g008040 Pisum sativum HOM05D005871 ORTHO05D003654 6.9e-11 72.0 245 36.7
Thecc.06G238200 Theobroma cacao HOM05D005871 ORTHO05D003654 9.1e-11 71.6 240 32.9
Cfa014230 Carpinus fangiana HOM05D008806 ORTHO05D003654 1.2e-10 71.2 208 33.2
CAN.G337.14 Capsicum annuum HOM05D033747 ORTHO05D033984 2.0e-10 70.5 233 37.8
FvH4_6g40700 Fragaria vesca HOM05D008806 ORTHO05D003654 2.0e-10 70.5 218 32.1
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 2.6e-10 70.1 242 32.2
Psat1g173400 Pisum sativum HOM05D005871 ORTHO05D003654 2.6e-10 70.1 217 33.2
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 4.5e-10 69.3 226 31.4
Glyma.09G012800 Glycine max HOM05D005871 ORTHO05D003654 7.7e-10 68.6 247 34.8
Gorai.009G449500 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.7e-09 67.4 233 30.0
MD00G1057200 Malus domestica HOM05D005871 ORTHO05D003654 1.7e-09 67.4 239 31.8
SalBow1G1270 Salvia bowleyana HOM05D005871 ORTHO05D003654 1.7e-09 67.4 223 31.8
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 2.2e-09 67.0 226 31.0
Gohir.D05G382950 Gossypium hirsutum HOM05D005871 ORTHO05D003654 2.2e-09 67.0 233 30.5
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 2.2e-09 67.0 203 33.5
Ciclev10016749m.g Citrus clementina HOM05D008806 ORTHO05D003654 2.9e-09 66.6 212 33.5
CARHR087720 Cardamine hirsuta HOM05D010616 ORTHO05D003654 3.8e-09 66.2 216 39.4
Eucgr.F02055 Eucalyptus grandis HOM05D005871 ORTHO05D003654 5.0e-09 65.9 243 28.0
Actinidia02292 Actinidia chinensis HOM05D005871 ORTHO05D003654 6.5e-09 65.5 231 31.2
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 6.5e-09 65.5 221 29.9
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 6.5e-09 65.5 221 29.9
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 6.5e-09 65.5 221 29.9
Haze_07001 Corylus avellana HOM05D005871 ORTHO05D003654 6.5e-09 65.5 216 39.8
Gohir.A07G191600 Gossypium hirsutum HOM05D008806 ORTHO05D003654 6.5e-09 65.5 218 32.6
Gorai.001G221500 Gossypium raimondii HOM05D008806 ORTHO05D003654 6.5e-09 65.5 208 32.7
QL06p003419 Quercus lobata HOM05D008806 ORTHO05D003654 6.5e-09 65.5 237 32.5
SalBow8G3140 Salvia bowleyana HOM05D005871 ORTHO05D003654 6.5e-09 65.5 208 37.0
Thecc.01G195400 Theobroma cacao HOM05D008806 ORTHO05D003654 6.5e-09 65.5 211 35.1
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 8.5e-09 65.1 250 33.6
Cfa000051 Carpinus fangiana HOM05D005871 ORTHO05D003654 1.1e-08 64.7 216 40.7
DCAR_022606 Daucus carota HOM05D005871 ORTHO05D003654 1.1e-08 64.7 270 30.7
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 1.1e-08 64.7 217 31.8
Glyma.17G006900 Glycine max HOM05D005871 ORTHO05D003654 1.1e-08 64.7 216 31.9
Gohir.D06G162300 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.9e-08 63.9 196 29.6
CsaV3_7G015020 Cucumis sativus L. HOM05D005871 ORTHO05D003654 3.2e-08 63.2 237 29.5
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 4.2e-08 62.8 217 32.7
Prupe.3G198500 Prunus persica HOM05D008806 ORTHO05D003654 4.2e-08 62.8 224 33.0
CiPaw.03G281200 Carya illinoinensis HOM05D005871 ORTHO05D003654 5.5e-08 62.4 219 36.1
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 5.5e-08 62.4 222 30.6
TAR629G2179 Trochodendron aralioides HOM05D005871 ORTHO05D003654 5.5e-08 62.4 153 37.9
Eucgr.L00169 Eucalyptus grandis HOM05D005871 ORTHO05D003654 7.2e-08 62.0 272 26.5
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 7.2e-08 62.0 173 34.1
Ah.06g181330 Amaranthus hybridus HOM05D005871 ORTHO05D003654 9.4e-08 61.6 226 37.2
MSTRG.6992 Avicennia marina HOM05D018445 ORTHO05D003654 9.4e-08 61.6 245 35.5
MSTRG.13016 Avicennia marina HOM05D018445 ORTHO05D021546 1.6e-07 60.8 208 35.6
Gorai.010G189400 Gossypium raimondii HOM05D005871 ORTHO05D003654 2.1e-07 60.5 254 26.4
FAN05G0544 Fragaria x ananassa HOM05D008806 ORTHO05D003654 2.7e-07 60.1 178 32.0
QL08p028006 Quercus lobata HOM05D008806 ORTHO05D003654 2.7e-07 60.1 215 31.6
Sed0002299 Sechium edule HOM05D005871 ORTHO05D003654 2.7e-07 60.1 216 32.4
Migut.M00045 Erythranthe guttata HOM05D005871 ORTHO05D003654 4.7e-07 59.3 222 33.8
Sed0022932 Sechium edule HOM05D008806 ORTHO05D003654 4.7e-07 59.3 205 29.3
arahy.Tifrunner.gnm1.ann1.5G685G Arachis hypogaea HOM05D005871 ORTHO05D003654 6.1e-07 58.9 229 31.0
Cpa.g.sc1092.4 Carica papaya HOM05D005871 ORTHO05D003654 6.1e-07 58.9 235 28.5
Gohir.D07G197900 Gossypium hirsutum HOM05D008806 ORTHO05D003654 6.1e-07 58.9 211 30.8
BolC3t16890H Brassica oleracea HOM05D010616 ORTHO05D003654 8.0e-07 58.5 235 29.4
ClCG02G002830 Citrullus lanatus HOM05D008806 ORTHO05D003654 1.0e-06 58.2 205 39.0
Duzib133G1309 Durio zibethinus HOM05D008806 ORTHO05D003654 1.0e-06 58.2 207 31.9
Cpa.g.sc211.26 Carica papaya HOM05D008806 ORTHO05D003654 1.4e-06 57.8 113 38.1
Cfa017914 Carpinus fangiana HOM05D000074 ORTHO05D000220 1.4e-06 57.8 83 42.2
arahy.Tifrunner.gnm1.ann1.56XTAU Arachis hypogaea HOM05D005871 ORTHO05D003654 3.0e-06 56.6 31 90.3
Cc09_g00530 Coffea canephora HOM05D005871 ORTHO05D003654 3.0e-06 56.6 258 28.7
Migut.M01661 Erythranthe guttata HOM05D018445 ORTHO05D021546 3.9e-06 56.2 236 33.9
arahy.Tifrunner.gnm1.ann1.C2C6BR Arachis hypogaea HOM05D005871 ORTHO05D003654 5.2e-06 55.8 250 34.4
Haze_12634 Corylus avellana HOM05D008806 ORTHO05D003654 5.2e-06 55.8 206 36.9
Potri.016G007400 Populus trichocarpa HOM05D005871 ORTHO05D003654 5.2e-06 55.8 210 30.5
PGSC0003DMG400017373 Solanum tuberosum HOM05D016037 ORTHO05D003654 5.2e-06 55.8 214 29.9
Manes.12G064700 Manihot esculenta HOM05D008806 ORTHO05D003654 6.7e-06 55.5 215 30.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 8.8e-06 55.1 30 90.0


User provided reference genes

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