Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.1e-146 522.3 261 100.0
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 6.4e-143 510.8 261 97.3
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 5.4e-142 507.7 261 96.9
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-140 503.1 261 95.4
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-140 503.1 261 95.4
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.9e-140 501.5 261 95.0
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.9e-140 501.5 261 95.0
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.9e-140 501.5 261 95.0
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.3e-139 498.0 261 93.9
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 7.3e-139 497.3 260 94.2
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 9.5e-139 496.9 261 93.9
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.6e-138 496.1 261 93.1
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 6.2e-138 494.2 261 93.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 6.2e-138 494.2 261 93.9
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 8.1e-138 493.8 261 93.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.1e-137 493.4 261 92.7
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.1e-137 493.4 261 92.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.4e-137 493.0 261 93.5
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.4e-137 493.0 261 93.1
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.8e-137 492.7 261 93.1
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.8e-137 492.7 261 92.7
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 3.1e-137 491.9 260 92.7
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 4.0e-137 491.5 261 93.5
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 92.7
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 6.8e-137 490.7 260 92.7
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 92.7
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 92.3
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.7
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.7
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.7
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.0e-136 489.2 260 92.3
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.0e-136 489.2 261 92.3
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 92.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 91.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 92.3
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 92.0
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 91.6
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.7
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.3
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 91.6
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 91.6
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 91.2
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 90.8
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.0
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.0
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 91.6
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 91.6
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 90.8
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 91.2
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 90.4
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 90.8
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.2e-134 481.9 277 88.4
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.2e-134 481.9 260 91.2
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 4.1e-134 481.5 260 90.8
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 89.7
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 4.1e-134 481.5 265 89.4
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 7.1e-134 480.7 258 91.5
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 90.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 90.0
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.0
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.0
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 90.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 90.0
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 90.4
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 89.7
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 89.7
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 90.0
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 89.7
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.0
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 89.7
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.7e-132 476.1 269 88.1
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 89.3
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 89.3
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.7e-132 476.1 256 91.0
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 89.7
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 89.7
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 89.3
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 89.7
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 5.1e-132 474.6 259 90.7
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 89.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.5e-131 472.2 285 84.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 7.3e-131 470.7 264 89.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.4
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.5
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 86.6
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 88.5
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.9
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.0
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 88.1
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.0
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 86.6
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 87.4
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.4
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.7
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.0
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.0
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 86.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.6e-128 462.2 260 87.3
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.6e-128 462.2 260 87.3
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 86.2
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 85.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 86.6
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.1
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-127 459.9 241 94.2
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.7e-127 459.5 260 86.5
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 2.2e-127 459.1 259 87.3
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 2.2e-127 459.1 259 87.3
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 84.3
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.7e-127 458.4 241 93.8
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 4.9e-127 458.0 260 87.7
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 86.6
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 8.4e-127 457.2 240 94.2
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 83.5
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 85.4
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 86.2
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 84.7
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 83.1
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 84.3
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.5e-123 445.7 256 85.2
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 83.9
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 83.9
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 83.9
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.8e-119 431.8 276 80.1
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 79.7
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 79.7
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 5.6e-115 417.9 261 81.6
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.3e-115 417.5 337 67.1
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.3e-115 417.5 261 75.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.3e-114 416.8 261 81.6
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 2.8e-114 415.6 261 77.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 4.8e-114 414.8 261 78.2
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 5.8e-112 407.9 213 92.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.9e-111 404.8 266 75.9
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 6.0e-109 397.9 261 78.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 6.0e-109 397.9 222 88.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.1e-107 393.7 201 93.5
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.3e-106 390.2 254 77.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.8e-106 389.0 309 69.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 6.2e-106 387.9 240 80.4
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.8e-100 369.8 195 89.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.9e-100 368.6 200 90.0
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.8e-98 362.5 257 77.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-92 343.6 177 93.2
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.6e-90 336.7 260 63.5
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.9e-83 313.2 161 91.9
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.9e-71 272.7 229 60.3
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.0e-67 260.0 240 60.4
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.0e-59 233.4 135 87.4
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 9.7e-59 231.1 113 96.5
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 6.3e-58 228.4 143 80.4
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-57 227.3 142 81.0
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 4.1e-49 199.1 98 94.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.5e-48 196.1 271 49.4
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-43 180.6 140 67.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 9.8e-43 177.9 196 52.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 8.3e-42 174.9 108 81.5
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 2.5e-38 163.3 135 63.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 4.3e-38 162.5 92 85.9
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.8e-36 157.1 195 48.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 7.5e-35 151.8 100 79.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 2.5e-30 136.7 81 82.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.0e-28 131.3 92 70.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.9e-25 120.6 111 61.3
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 5.2e-20 102.4 64 81.2
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.7e-16 90.1 81 61.7
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.4e-11 73.2 59 64.4
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 4.9e-10 69.3 56 67.9
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 2.1e-08 63.9 62 59.7
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 4.6e-08 62.8 52 65.4
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 6.0e-08 62.4 44 75.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-07 60.5 38 71.1
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 2.3e-07 60.5 37 75.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 5.1e-07 59.3 34 79.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 4.3e-06 56.2 34 76.5


User provided reference genes

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