Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.4e-69 266.2 136 100.0
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.3e-22 110.2 136 53.7
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.2e-21 104.4 136 52.9
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.8e-19 99.8 136 52.2
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 3.3e-18 95.5 136 53.7
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 5.7e-18 94.7 134 50.7
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.3e-17 93.6 136 49.3
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.8e-17 92.4 136 49.3
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.8e-17 91.7 136 47.1
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.8e-16 89.7 139 49.6
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.1e-16 89.0 125 51.2
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.1e-16 88.6 135 48.9
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.9e-16 87.8 136 45.6
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 9.1e-16 87.4 135 48.1
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.1e-16 87.4 135 48.1
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.1e-16 87.4 135 48.1
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 9.1e-16 87.4 135 48.1
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 1.2e-15 87.0 136 46.3
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.0e-15 86.3 125 51.2
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.7e-14 83.2 135 46.7
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.8e-14 82.0 124 49.2
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.8e-14 82.0 124 49.2
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 6.5e-14 81.3 136 44.1
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 3.2e-13 79.0 139 40.3
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 4.2e-13 78.6 140 43.6
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 5.5e-13 78.2 136 44.9
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 1.2e-12 77.0 125 46.4
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 2.7e-12 75.9 144 42.4
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.7e-12 75.9 138 40.6
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 2.7e-12 75.9 138 40.6
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.7e-12 75.1 125 47.2
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 4.7e-12 75.1 125 47.2
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 6.1e-12 74.7 137 43.1
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 6.1e-12 74.7 136 42.6
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 3.0e-11 72.4 136 41.9
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 3.0e-11 72.4 136 41.9
Sed0024469 Sechium edule HOM05D004793 ORTHO05D004423 5.1e-11 71.6 136 41.2
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.1e-10 70.5 143 39.9
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 1.5e-10 70.1 136 39.7
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.0e-10 69.7 158 38.6
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 2.6e-10 69.3 140 43.6
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 2.6e-10 69.3 151 39.7
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 3.3e-10 68.9 143 37.1
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 3.3e-10 68.9 136 39.7
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 5.7e-10 68.2 137 40.1
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.3e-09 67.0 129 39.5
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.3e-09 67.0 136 39.0
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.3e-09 67.0 143 41.3
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.7e-09 66.6 143 39.2
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 2.2e-09 66.2 141 39.7
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.8e-09 65.9 139 41.7
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.8e-09 65.9 148 38.5
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 3.7e-09 65.5 162 38.9
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 4.8e-09 65.1 137 40.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 6.3e-09 64.7 146 35.6
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 8.2e-09 64.3 138 39.9
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.1e-08 63.9 137 40.1
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.1e-08 63.9 146 37.7
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.1e-08 63.9 150 36.0
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.4e-08 63.5 145 37.2
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 1.4e-08 63.5 140 40.7
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.4e-08 63.5 143 37.1
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 1.4e-08 63.5 136 37.5
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.8e-08 63.2 146 38.4
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.8e-08 63.2 146 37.0
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.4e-08 62.8 141 41.1
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.4e-08 62.8 140 38.6
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 3.1e-08 62.4 140 40.7
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 3.1e-08 62.4 145 40.0
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 4.1e-08 62.0 140 38.6
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.3e-08 61.6 113 40.7
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 7.0e-08 61.2 135 39.3
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 9.1e-08 60.8 158 36.7
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.1e-08 60.8 143 37.1
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 9.1e-08 60.8 141 35.5
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-07 60.5 139 36.0
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.5e-07 60.1 136 36.8
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.5e-07 60.1 158 36.7
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-07 60.1 139 36.7
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 2.0e-07 59.7 133 42.9
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 3.4e-07 58.9 141 34.8
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.4e-07 58.9 138 40.6
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 3.4e-07 58.9 151 38.4
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 4.5e-07 58.5 143 35.7
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 4.5e-07 58.5 142 39.4
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 5.9e-07 58.2 132 40.2
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.7e-07 57.8 138 37.7
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.0e-06 57.4 143 35.0
Gorai.002G096900 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.7e-06 56.6 106 43.4
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.7e-06 56.6 160 38.1
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.9e-06 55.8 147 34.7
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 3.8e-06 55.5 142 35.9
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.8e-06 55.5 158 34.8
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 5.0e-06 55.1 158 38.0
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.0e-06 55.1 136 36.0
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.5e-06 54.7 136 34.6
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.5e-06 54.7 136 34.6
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 6.5e-06 54.7 139 36.0
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.5e-06 54.7 140 34.3
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 8.5e-06 54.3 158 34.2
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 8.5e-06 54.3 136 35.3
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 8.5e-06 54.3 136 34.6


User provided reference genes

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