Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 1.8e-199 699.5 497 100.0
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 3.0e-165 585.9 497 87.1
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 5.6e-148 528.5 497 82.3
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.6e-148 528.5 497 82.3
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 9.6e-148 527.7 497 81.3
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.3e-147 527.3 496 81.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.4e-146 523.9 497 81.7
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.0e-145 520.0 497 81.3
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.7e-144 516.9 498 82.1
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 1.7e-112 410.6 520 71.2
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 3.6e-110 402.9 491 70.9
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.1e-108 397.9 527 68.7
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.7e-107 394.0 526 66.2
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 3.1e-106 389.8 480 70.2
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 6.1e-102 375.6 518 65.6
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.3e-98 362.5 481 66.3
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 9.1e-98 361.7 484 65.9
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.6e-97 360.9 494 65.0
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.6e-97 360.9 481 66.5
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.6e-97 360.9 481 66.3
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 1.3e-96 357.8 474 68.1
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 1.3e-96 357.8 487 68.0
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 2.2e-96 357.1 499 65.5
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.9e-96 356.7 509 64.8
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.1e-95 354.8 469 67.2
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 7.2e-95 352.1 518 63.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 2.7e-94 350.1 452 68.1
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 2.7e-94 350.1 452 68.1
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 3.6e-94 349.7 489 64.4
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.4e-93 347.8 472 69.7
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 3.0e-93 346.7 500 67.2
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 4.0e-93 346.3 460 71.1
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.2e-92 344.7 501 64.1
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 2.6e-92 343.6 462 67.1
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 9.7e-92 341.7 507 64.5
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.8e-91 340.1 477 67.7
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 4.8e-91 339.3 469 66.3
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.1e-90 338.2 507 63.1
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 2.4e-90 337.0 465 66.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 4.1e-90 336.3 464 69.2
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 7.0e-90 335.5 485 65.6
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.2e-89 334.7 504 61.5
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.7e-89 333.6 372 78.5
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 4.5e-89 332.8 525 61.9
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.7e-88 330.9 466 65.9
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.9e-88 330.1 519 62.4
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 8.5e-88 328.6 473 55.4
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.5e-87 327.8 507 63.7
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.9e-87 327.4 474 65.8
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 8.0e-86 322.0 478 67.4
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 8.0e-86 322.0 510 61.6
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 3.0e-85 320.1 485 61.0
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 5.2e-85 319.3 485 67.8
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 8.8e-85 318.5 496 63.1
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.2e-84 318.2 498 63.7
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 2.6e-84 317.0 468 64.1
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 3.4e-84 316.6 495 64.6
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 4.4e-84 316.2 490 62.0
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 9.8e-84 315.1 463 68.3
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.7e-83 314.3 464 69.2
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.7e-83 314.3 498 63.3
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 8.3e-83 312.0 462 66.5
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 3.1e-82 310.1 400 70.2
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.2e-81 308.1 470 66.0
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.0e-81 307.4 443 66.1
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 3.5e-81 306.6 399 71.9
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.0e-80 305.1 338 80.5
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.7e-80 304.3 484 62.8
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 5.0e-80 302.8 441 66.0
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 6.5e-80 302.4 473 64.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 2.5e-79 300.4 490 60.2
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.2e-79 300.1 475 61.5
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.3e-77 293.9 464 64.2
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 5.2e-77 292.7 484 61.8
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 6.8e-77 292.4 527 58.1
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.5e-76 291.2 453 65.3
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.4e-76 290.0 466 63.7
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 8.3e-75 285.4 543 56.2
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.4e-74 283.9 433 67.7
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.6e-73 281.2 487 63.2
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 7.8e-73 278.9 496 59.3
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 3.8e-72 276.6 456 62.3
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 3.8e-72 276.6 496 58.9
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 2.1e-70 270.8 399 68.2
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 3.0e-69 266.9 477 61.6
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 9.8e-68 261.9 454 59.0
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 3.7e-67 260.0 467 59.3
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 6.4e-67 259.2 447 60.6
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 2.7e-65 253.8 292 85.3
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 4.3e-63 246.5 508 53.3
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 9.5e-63 245.4 448 56.0
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 5.4e-58 229.6 292 85.6
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 7.0e-58 229.2 462 57.1
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.3e-56 224.9 449 57.0
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 2.3e-53 214.2 264 50.0
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 3.4e-52 210.3 449 57.5
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 5.8e-52 209.5 235 96.2
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 8.3e-51 205.7 478 54.2
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.4e-50 204.1 357 65.3
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.6e-49 201.4 355 60.3
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 2.7e-49 200.7 292 79.8
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 3.9e-48 196.8 298 57.4
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 9.9e-44 182.2 454 32.6
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.7e-40 171.4 119 86.6
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 3.1e-37 160.6 319 47.3
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 2.0e-36 157.9 109 89.0
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 5.4e-34 149.8 459 51.4
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.2e-33 148.7 247 41.3
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.5e-33 147.1 355 56.3
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 6.0e-33 146.4 290 68.3
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.4e-29 134.4 148 51.4
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 4.8e-22 110.2 325 57.2
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 4.8e-22 110.2 334 58.4
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.5e-18 96.7 323 54.5
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 9.3e-18 95.9 353 51.8
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 2.7e-17 94.4 103 48.5
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 3.9e-16 90.5 331 27.5
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 3.8e-11 73.9 156 33.3
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.9e-10 71.6 326 25.5
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 7.1e-10 69.7 103 44.7
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 3.9e-08 63.9 111 48.6
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 3.9e-08 63.9 113 31.0
PGSC0003DMG402029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 4.8e-06 57.0 45 64.4


User provided reference genes

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