Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 3.9e-65 252.3 248 100.0
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 2.2e-52 209.9 235 96.2
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.4e-51 206.5 235 91.1
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 1.0e-49 201.1 235 88.5
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.0e-49 201.1 235 88.5
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.7e-49 200.3 235 86.0
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.6e-49 198.4 235 87.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.6e-49 198.4 235 87.7
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 4.3e-48 195.7 235 87.7
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.3e-47 194.1 140 97.9
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 7.6e-45 184.9 235 84.3
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.7e-44 183.7 234 81.2
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 8.4e-44 181.4 235 83.4
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.9e-43 180.3 139 92.1
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.9e-43 180.3 141 90.1
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 3.2e-43 179.5 234 80.3
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 3.2e-43 179.5 234 82.1
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 5.4e-43 178.7 235 83.8
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 7.1e-43 178.3 235 80.0
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 7.1e-43 178.3 235 83.0
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.2e-42 177.6 235 79.6
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 2.1e-42 176.8 231 80.5
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 2.1e-42 176.8 231 80.5
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 2.1e-42 176.8 231 80.5
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.1e-42 176.8 231 80.5
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 2.1e-42 176.8 231 80.5
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 2.1e-42 176.8 231 80.5
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.1e-42 176.8 138 88.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 2.7e-42 176.4 140 90.7
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.7e-42 176.4 141 89.4
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.7e-42 176.4 234 81.2
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 3.5e-42 176.0 235 82.1
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 4.6e-42 175.6 236 58.5
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.6e-42 175.6 139 88.5
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.6e-42 175.6 139 88.5
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 4.6e-42 175.6 139 88.5
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 4.6e-42 175.6 235 81.7
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 6.0e-42 175.3 235 79.1
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 7.9e-42 174.9 235 79.6
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.0e-41 172.9 140 88.6
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 3.9e-41 172.6 135 91.9
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 5.1e-41 172.2 140 83.6
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 5.1e-41 172.2 140 83.6
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.1e-40 171.0 136 83.8
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 4.3e-40 169.1 135 88.1
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 5.6e-40 168.7 235 78.3
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 5.6e-40 168.7 139 83.5
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 7.4e-40 168.3 224 82.6
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 7.4e-40 168.3 234 81.2
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.3e-39 167.5 135 87.4
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 4.8e-39 165.6 234 84.2
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 4.8e-39 165.6 232 81.5
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 8.1e-39 164.9 234 79.1
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 8.1e-39 164.9 234 80.8
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.1e-38 164.5 137 83.9
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.4e-38 163.3 137 86.9
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 2.4e-38 163.3 134 82.1
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 2.6e-37 159.8 136 85.3
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.6e-37 159.8 136 83.8
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 3.4e-37 159.5 234 79.1
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 4.5e-37 159.1 136 83.1
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 5.8e-37 158.7 234 83.3
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.6e-37 158.3 234 82.1
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.3e-36 157.5 235 81.3
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.7e-36 157.1 140 81.4
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.7e-36 157.1 140 81.4
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 1.7e-36 157.1 234 81.6
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 2.2e-36 156.8 234 82.1
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.9e-36 156.4 227 84.6
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 3.8e-36 156.0 234 81.6
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 4.9e-36 155.6 220 84.5
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 6.4e-36 155.2 136 82.4
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.4e-35 154.1 139 80.6
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.4e-35 154.1 235 80.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.9e-35 153.7 134 79.1
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 2.5e-35 153.3 136 82.4
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 7.1e-35 151.8 234 81.6
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.2e-34 151.0 233 78.1
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.6e-34 150.6 92 78.3
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.6e-34 150.6 139 79.1
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 2.1e-34 150.2 133 84.2
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 2.7e-34 149.8 232 76.7
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 3.5e-34 149.4 234 76.1
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 6.0e-34 148.7 137 76.6
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 7.9e-34 148.3 223 74.9
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.0e-33 147.9 234 76.1
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.0e-33 147.9 92 70.7
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 5.1e-33 145.6 85 81.2
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.1e-32 144.4 233 82.0
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.5e-32 144.1 140 72.9
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 5.6e-32 142.1 92 75.0
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 9.6e-32 141.4 90 78.9
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.1e-30 136.3 137 72.3
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.1e-30 136.3 136 64.0
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 3.4e-29 132.9 135 71.9
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 2.2e-28 130.2 133 71.4
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 3.8e-28 129.4 90 70.0
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 1.4e-27 127.5 133 72.9
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 4.6e-26 122.5 71 77.5
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 3.0e-25 119.8 231 50.6
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 5.7e-24 115.5 90 58.9
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.1e-22 111.3 198 84.3
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 2.5e-19 100.1 198 83.3
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 2.1e-18 97.1 56 83.9
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 9.7e-16 88.2 67 56.7
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 5.3e-14 82.4 55 67.3
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 6.9e-14 82.0 84 46.4
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.0e-12 78.2 84 42.9
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.0e-12 78.2 101 72.3
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.7e-12 77.4 53 66.0
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 2.9e-12 76.6 52 69.2
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 3.2e-11 73.2 169 85.8
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.4e-09 67.8 89 32.6
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 2.6e-08 63.5 86 38.4
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 4.8e-07 59.3 86 32.6


User provided reference genes

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