Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 7.4e-77 290.4 142 100.0
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 1.3e-36 156.8 109 76.1
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 1.8e-35 152.9 125 67.2
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 7.0e-35 151.0 120 65.8
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.6e-34 149.8 120 65.8
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.0e-33 147.1 106 71.7
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 2.9e-33 145.6 120 64.2
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 5.0e-33 144.8 105 71.4
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 6.5e-33 144.4 121 64.5
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 8.5e-33 144.1 106 67.9
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.5e-32 143.3 106 69.8
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 2.5e-32 142.5 106 67.0
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 4.2e-32 141.7 106 69.8
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 4.2e-32 141.7 106 68.9
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 5.5e-32 141.4 106 69.8
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 7.2e-32 141.0 106 66.0
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 7.2e-32 141.0 106 67.0
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 9.4e-32 140.6 105 68.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.2e-31 140.2 106 65.1
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.2e-31 140.2 106 67.9
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.1e-31 139.4 105 68.6
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 2.1e-31 139.4 119 60.5
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 2.1e-31 139.4 106 67.9
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 2.7e-31 139.0 106 68.9
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 4.7e-31 138.3 106 67.0
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 4.7e-31 138.3 105 67.6
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.1e-31 137.9 105 67.6
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 8.0e-31 137.5 106 64.2
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 8.0e-31 137.5 106 67.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 8.0e-31 137.5 106 67.0
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 1.0e-30 137.1 106 65.1
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 1.0e-30 137.1 106 67.9
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 1.0e-30 137.1 119 60.5
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.4e-30 136.7 129 55.8
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.4e-30 136.7 106 65.1
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.3e-30 136.0 105 65.7
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 2.3e-30 136.0 120 60.0
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 2.3e-30 136.0 106 64.2
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 2.3e-30 136.0 106 66.0
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.0e-30 135.6 106 65.1
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 3.0e-30 135.6 106 65.1
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 3.0e-30 135.6 106 65.1
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 3.0e-30 135.6 113 62.8
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 4.0e-30 135.2 105 63.8
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 4.0e-30 135.2 105 67.6
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 4.0e-30 135.2 106 63.2
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 6.7e-30 134.4 106 65.1
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 6.7e-30 134.4 105 65.7
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 6.7e-30 134.4 105 65.7
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 6.7e-30 134.4 118 60.2
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 6.7e-30 134.4 105 64.8
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 8.8e-30 134.0 106 63.2
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 8.8e-30 134.0 106 65.1
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.2e-29 133.7 105 63.8
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 1.2e-29 133.7 106 65.1
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.2e-29 133.7 106 64.2
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.2e-29 133.7 106 64.2
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.5e-29 133.3 106 66.0
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.5e-29 133.3 106 65.1
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.5e-29 133.3 105 64.8
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.5e-29 133.3 105 64.8
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 2.0e-29 132.9 105 64.8
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 2.0e-29 132.9 106 64.2
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 2.6e-29 132.5 106 62.3
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 3.3e-29 132.1 97 71.1
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 4.4e-29 131.7 106 62.3
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 4.4e-29 131.7 105 64.8
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 5.7e-29 131.3 106 64.2
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 5.7e-29 131.3 105 63.8
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 5.7e-29 131.3 106 63.2
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 5.7e-29 131.3 106 63.2
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 7.5e-29 131.0 106 66.0
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 9.7e-29 130.6 106 58.5
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 1.7e-28 129.8 106 59.4
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.7e-28 129.8 105 64.8
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 1.7e-28 129.8 106 63.2
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.2e-28 129.4 106 61.3
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 2.8e-28 129.0 106 59.4
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 2.8e-28 129.0 106 59.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.7e-28 128.6 106 60.4
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 4.8e-28 128.3 106 61.3
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 4.8e-28 128.3 105 61.0
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 4.8e-28 128.3 106 64.2
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 8.2e-28 127.5 106 62.3
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 8.2e-28 127.5 106 57.5
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.1e-27 127.1 106 58.5
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.8e-27 126.3 106 58.5
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.8e-27 126.3 106 58.5
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.8e-27 126.3 106 58.5
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 2.4e-27 125.9 106 59.4
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 4.1e-27 125.2 106 57.5
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 4.1e-27 125.2 110 59.1
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 5.3e-27 124.8 106 55.7
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 7.0e-27 124.4 106 57.5
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 9.1e-27 124.0 106 56.6
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 4.5e-26 121.7 106 55.7
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.0e-25 120.6 106 58.5
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 1.3e-25 120.2 104 60.6
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 5.0e-25 118.2 98 61.2
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 4.2e-24 115.2 106 55.7
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 2.7e-23 112.5 106 55.7
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.8e-22 109.8 94 59.6
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 9.1e-19 97.4 106 48.1
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 2.0e-18 96.3 82 61.0
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 3.5e-18 95.5 79 62.0
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 4.0e-14 82.0 66 69.7
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 6.3e-12 74.7 113 41.6
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 9.2e-11 70.9 106 37.7
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.6e-10 70.1 73 56.2
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.6e-10 70.1 105 40.0
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.6e-10 70.1 105 39.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.5e-08 62.8 106 37.7


User provided reference genes

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