Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 2.9e-260 901.4 450 100.0
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.8e-249 865.5 450 96.7
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.3e-233 812.8 450 89.6
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.0e-228 794.3 451 88.9
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 9.4e-227 790.0 450 86.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.6e-226 789.3 450 87.1
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.7e-225 783.9 450 86.2
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.3e-223 779.6 450 85.8
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 2.5e-219 765.4 400 94.0
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 8.5e-212 740.3 436 84.6
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.5e-211 739.6 454 82.2
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.5e-208 729.6 451 80.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 8.2e-207 723.8 456 79.4
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 1.4e-206 723.0 454 80.0
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.4e-206 723.0 454 79.7
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.1e-206 721.5 436 82.8
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 7.7e-205 717.2 448 80.4
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.0e-204 716.8 452 79.9
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 9.4e-203 710.3 453 77.5
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 6.1e-202 707.6 446 80.7
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.0e-201 706.8 473 77.2
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.0e-201 706.8 462 77.7
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 5.2e-201 704.5 461 78.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 8.8e-201 703.7 453 78.6
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 1.2e-200 703.4 421 82.7
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.4e-200 701.4 397 86.4
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 4.4e-200 701.4 452 77.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.4e-200 701.4 452 77.0
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 5.7e-200 701.0 460 77.4
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.5e-200 700.7 452 76.8
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.3e-199 699.9 452 76.5
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.3e-199 699.9 451 77.2
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.7e-199 699.5 459 77.6
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.1e-198 695.3 458 74.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.7e-197 692.2 436 79.1
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 1.0e-196 690.3 404 84.2
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 5.0e-196 688.0 420 80.2
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 6.5e-196 687.6 473 75.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 6.5e-196 687.6 450 76.2
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 8.6e-196 687.2 457 74.0
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 1.5e-195 686.4 450 75.8
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.9e-195 686.0 457 74.0
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-195 686.0 457 73.7
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.9e-195 686.0 454 73.8
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 4.2e-195 684.9 461 74.2
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.2e-194 683.3 445 77.5
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.6e-194 682.9 458 74.9
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.8e-194 682.2 454 73.3
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.8e-194 682.2 461 74.0
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 3.6e-194 681.8 404 82.2
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 8.0e-194 680.6 458 72.7
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 8.0e-194 680.6 458 73.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 8.0e-194 680.6 473 73.2
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.0e-193 680.2 439 76.8
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 1.0e-193 680.2 455 74.1
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.4e-193 679.9 458 72.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 1.4e-193 679.9 476 74.4
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.8e-193 679.5 402 81.1
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.3e-193 679.1 457 73.1
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.0e-193 678.7 461 75.3
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 6.8e-193 677.6 429 78.6
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 6.8e-193 677.6 461 75.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 6.8e-193 677.6 404 81.9
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 8.9e-193 677.2 450 73.6
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 8.9e-193 677.2 384 85.7
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-192 676.8 400 81.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.2e-192 676.8 429 78.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.0e-192 676.0 439 76.1
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.0e-192 676.0 383 85.6
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.6e-192 675.6 402 80.8
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 3.4e-192 675.2 393 84.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.4e-192 675.2 465 74.6
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.4e-192 674.9 396 83.3
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 5.7e-192 674.5 456 73.9
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 5.7e-192 674.5 405 82.0
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 7.5e-192 674.1 440 76.8
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.7e-191 672.9 476 73.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.2e-191 672.5 400 80.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 2.8e-191 672.2 414 79.2
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 4.9e-191 671.4 454 74.2
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 6.3e-191 671.0 412 80.3
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 8.3e-191 670.6 442 75.3
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 8.3e-191 670.6 412 80.8
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.1e-190 670.2 458 74.2
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.4e-190 669.1 447 74.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.1e-190 668.7 456 74.1
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 7.0e-190 667.5 455 72.3
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 7.0e-190 667.5 386 83.9
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.2e-189 666.8 411 78.6
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 7.8e-189 664.1 398 81.2
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 7.8e-189 664.1 385 83.6
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.0e-188 663.7 389 83.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 2.9e-188 662.1 404 80.0
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.9e-188 662.1 406 79.6
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 5.0e-188 661.4 388 83.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 6.6e-188 661.0 385 82.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-187 659.4 382 82.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.6e-187 657.9 405 81.2
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 7.3e-187 657.5 387 81.9
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.1e-186 656.0 418 77.0
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 6.4e-183 644.4 433 74.8
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.7e-180 636.3 519 64.2
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.9e-180 635.2 400 77.0
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 5.8e-176 621.3 463 67.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 4.9e-175 618.2 406 74.6
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.2e-166 589.0 464 67.9
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.7e-159 566.6 357 75.1
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.7e-156 554.3 463 64.8
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 3.6e-154 548.9 458 62.2
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.4e-153 547.0 407 67.8
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 5.3e-153 545.0 455 63.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.7e-148 530.0 378 67.2
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.5e-147 526.9 375 71.5
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.2e-144 517.3 402 64.9
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.0e-144 516.5 313 83.4
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 2.2e-143 513.1 326 81.0
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 3.3e-139 499.2 346 73.4
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.8e-138 495.4 373 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.4e-137 493.8 357 66.9
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 9.9e-136 487.6 363 70.5
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 2.7e-133 479.6 359 66.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.5e-133 479.2 318 74.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.3e-132 477.2 361 63.4
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.3e-127 460.7 276 80.1
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.6e-125 452.2 289 74.4
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.9e-118 430.3 415 56.6
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 9.4e-118 427.9 289 74.4
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.9e-110 403.7 252 77.8
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 9.1e-105 384.8 316 65.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 8.8e-100 368.2 212 85.4
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.5e-99 367.5 358 53.1
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.4e-99 365.9 316 63.3
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 5.0e-95 352.4 329 53.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 4.8e-90 335.9 234 71.8
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 7.0e-89 332.0 213 73.7
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 6.8e-84 315.5 228 69.7
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 7.2e-78 295.4 211 69.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 9.8e-75 285.0 174 79.3
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 4.3e-70 269.6 233 59.7
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.3e-66 258.1 233 58.4
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.6e-61 241.1 137 86.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 3.6e-61 240.0 367 39.8
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 1.4e-60 238.0 124 87.1
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.0e-55 220.3 291 42.6
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 4.9e-50 203.0 134 75.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.3e-39 168.3 113 77.0
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 1.7e-39 167.9 113 77.9
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.1e-36 158.7 111 69.4
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 6.9e-36 156.0 85 85.9
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 4.4e-35 153.3 124 64.5
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 9.6e-30 135.6 77 87.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.4e-25 121.7 231 37.2
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.9e-25 121.3 86 70.9
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 5.1e-23 113.2 117 58.1
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 5.6e-22 109.8 62 96.8
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 3.1e-20 104.0 62 90.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 3.9e-15 87.0 68 61.8
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.5e-14 84.3 58 58.6
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 2.5e-14 84.3 50 76.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 6.5e-10 69.7 44 72.7
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.8e-07 61.6 220 25.0


User provided reference genes

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