Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G228300 Prunus persica HOM05D000607 ORTHO05D000518 1.1e-48 196.4 110 100.0
Prupe.2G294600 Prunus persica HOM05D000607 ORTHO05D000518 4.0e-14 81.6 43 100.0
FvH4_7g29510 Fragaria vesca HOM05D000607 ORTHO05D000518 2.6e-13 79.0 43 95.3
FAN01G2376 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.6e-13 79.0 43 95.3
FAN03G1315 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.6e-13 79.0 43 95.3
FAN03G1886 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.6e-13 79.0 43 95.3
FAN06G0737 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.6e-13 79.0 43 95.3
FAN06G1071 Fragaria x ananassa HOM05D000607 ORTHO05D000518 2.6e-13 79.0 43 95.3
FAN10G2857 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.8e-13 77.8 43 93.0
FAN10G3783 Fragaria x ananassa HOM05D000607 ORTHO05D000518 5.8e-13 77.8 43 93.0
Atru.chr1.456 Acer truncatum HOM05D000607 ORTHO05D000518 7.6e-13 77.4 43 90.7
Gohir.A12G257600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 7.6e-13 77.4 43 90.7
Gorai.008G277300 Gossypium raimondii HOM05D000607 ORTHO05D000518 7.6e-13 77.4 43 90.7
Sabra12G0106400 Salix brachista HOM05D000607 ORTHO05D000518 7.6e-13 77.4 43 90.7
AUR62021189 Chenopodium quinoa HOM05D000262 ORTHO05D009380 9.9e-13 77.0 43 90.7
Potri.015G144200 Populus trichocarpa HOM05D000607 ORTHO05D000518 9.9e-13 77.0 43 90.7
CSS0049347 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.3e-12 76.6 43 88.4
Potri.012G141500 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.9e-12 75.5 43 90.7
RcHm_v2.0_Chr1g0377351 Rosa chinensis HOM05D000607 ORTHO05D000518 2.9e-12 75.5 40 97.5
Duzib205G0442 Durio zibethinus HOM05D000607 ORTHO05D000518 3.8e-12 75.1 40 95.0
GSVIVG01028974001 Vitis vinifera HOM05D000607 ORTHO05D000518 3.8e-12 75.1 43 86.0
AL6G35040 Arabidopsis lyrata HOM05D000607 ORTHO05D000518 6.4e-12 74.3 40 92.5
CANSAT21G1682 Cannabis sativa HOM05D000607 ORTHO05D000518 6.4e-12 74.3 40 92.5
Dinv35213 Davidia involucrata HOM05D000262 ORTHO05D009380 6.4e-12 74.3 43 86.0
Actinidia34115 Actinidia chinensis HOM05D000607 ORTHO05D000518 8.4e-12 73.9 40 92.5
HanXRQChr09g0253611 Helianthus annuus HOM05D000607 ORTHO05D000518 8.4e-12 73.9 40 92.5
Lsat_1_v5_gn_9_55940 Lactuca sativa HOM05D000607 ORTHO05D000518 8.4e-12 73.9 40 92.5
CiPaw.04G071200 Carya illinoinensis HOM05D000607 ORTHO05D000518 1.1e-11 73.6 40 92.5
ClCG09G012900 Citrullus lanatus HOM05D000607 ORTHO05D000518 1.1e-11 73.6 40 92.5
CsaV3_3G049960 Cucumis sativus L. HOM05D000607 ORTHO05D000518 1.1e-11 73.6 40 92.5
THA.LOC104818169 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 1.4e-11 73.2 40 90.0
arahy.Tifrunner.gnm1.ann1.N1W8DH Arachis hypogaea HOM05D000607 ORTHO05D000518 1.9e-11 72.8 40 90.0
BcaB04g19847 Brassica carinata HOM05D000607 ORTHO05D000518 1.9e-11 72.8 40 90.0
BcaNung01842 Brassica carinata HOM05D001293 ORTHO05D001143 1.9e-11 72.8 40 90.0
Carub.0006s2151 Capsella rubella HOM05D000607 ORTHO05D000518 1.9e-11 72.8 40 90.0
CARHR189770 Cardamine hirsuta HOM05D000607 ORTHO05D000518 1.9e-11 72.8 40 90.0
Os03g0111400 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 1.9e-11 72.8 43 88.4
Sp2g23460 Schrenkiella parvula HOM05D000607 ORTHO05D000518 1.9e-11 72.8 40 90.0
THA.LOC104798928 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 1.9e-11 72.8 40 90.0
Aa31LG11G3130 Aethionema arabicum HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 87.5
CiPaw.03G106600 Carya illinoinensis HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
COL.COLO4_14312 Corchorus olitorius HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Dinv28439 Davidia involucrata HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Duzib084G1049 Durio zibethinus HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Gohir.A09G041900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Gohir.D09G042800 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Gohir.D12G258900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Gorai.006G049200 Gossypium raimondii HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Hma1.2p1_0270F.1_g108010 Hydrangea macrophylla HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Lj5g0019793 Lotus japonicus HOM05D000607 ORTHO05D000518 2.4e-11 72.4 43 83.7
QL09p014173 Quercus lobata HOM05D000607 ORTHO05D000518 2.4e-11 72.4 40 90.0
Manes.06G147500 Manihot esculenta HOM05D000607 ORTHO05D000518 3.2e-11 72.0 40 90.0
Hund04743 Selenicereus undatus HOM05D000607 ORTHO05D000518 3.2e-11 72.0 40 90.0
TWI14G0448 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 3.2e-11 72.0 40 90.0
ECA232G0205 Erigeron canadensis HOM05D000607 ORTHO05D000518 5.4e-11 71.2 40 90.0
Sed0010299 Sechium edule HOM05D000607 ORTHO05D000518 5.4e-11 71.2 40 90.0
HPP92_022561 Vanilla planifolia HOM05D000607 ORTHO05D000518 5.4e-11 71.2 43 83.7
Actinidia31820 Actinidia chinensis HOM05D000607 ORTHO05D000518 7.1e-11 70.9 43 83.7
Eucgr.A02786 Eucalyptus grandis HOM05D000607 ORTHO05D000518 7.1e-11 70.9 40 85.0
Glyma.09G138600 Glycine max HOM05D000607 ORTHO05D000518 7.1e-11 70.9 40 87.5
Glyma.16G189302 Glycine max HOM05D000607 ORTHO05D000518 7.1e-11 70.9 40 87.5
Sc19g0001500 Simmondsia chinensis HOM05D000607 ORTHO05D000518 7.1e-11 70.9 40 87.5
CSS0020590 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 9.3e-11 70.5 40 87.5
Nitab4.5_0002117g0010 Nicotiana tabacum HOM05D000607 ORTHO05D000518 9.3e-11 70.5 43 81.4
Nitab4.5_0003072g0030 Nicotiana tabacum HOM05D000607 ORTHO05D000518 9.3e-11 70.5 43 81.4
Peaxi162Scf00444g00840 Petunia axillaris HOM05D000607 ORTHO05D000518 9.3e-11 70.5 43 81.4
PGR142G1784 Punica granatum HOM05D000607 ORTHO05D000518 9.3e-11 70.5 40 87.5
PGSC0003DMG400014342 Solanum tuberosum HOM05D000607 ORTHO05D000518 9.3e-11 70.5 43 81.4
Thecc.03G177000 Theobroma cacao HOM05D000607 ORTHO05D000518 9.3e-11 70.5 40 90.0
Dinv38957 Davidia involucrata HOM05D000607 ORTHO05D000518 1.2e-10 70.1 40 85.0
Manes.14G026000 Manihot esculenta HOM05D000607 ORTHO05D000518 1.2e-10 70.1 40 85.0
MD01G1201200 Malus domestica HOM05D000607 ORTHO05D000518 1.6e-10 69.7 39 92.3
Medtr1g100587 Medicago truncatula HOM05D000607 ORTHO05D000518 1.6e-10 69.7 43 79.1
Medtr6g045257 Medicago truncatula HOM05D000607 ORTHO05D000518 1.6e-10 69.7 40 85.0
Phvul.004G116400 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.6e-10 69.7 40 85.0
TPR.G10746 Trifolium pratense HOM05D000607 ORTHO05D000518 1.6e-10 69.7 40 85.0
VMungo0464G2180 Vigna mungo HOM05D000607 ORTHO05D000518 1.6e-10 69.7 40 85.0
Aqoxy7G00358 Aquilegia oxysepala HOM05D000607 ORTHO05D000518 2.1e-10 69.3 43 74.4
CSS0007996 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.1e-10 69.3 40 85.0
CSS0011803 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.1e-10 69.3 40 85.0
Lj2g0016591 Lotus japonicus HOM05D000607 ORTHO05D000518 2.1e-10 69.3 40 82.5
Lalb_Chr03g0034561 Lupinus albus HOM05D000607 ORTHO05D000518 2.1e-10 69.3 40 85.0
Nitab4.5_0001842g0020 Nicotiana tabacum HOM05D000607 ORTHO05D000518 2.1e-10 69.3 43 79.1
vmacro06679 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 2.1e-10 69.3 42 83.3
Glyma.10G235700 Glycine max HOM05D000607 ORTHO05D000518 2.7e-10 68.9 41 82.9
Phvul.007G070001 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 2.7e-10 68.9 42 81.0
PGR042G2454 Punica granatum HOM05D000607 ORTHO05D000518 2.7e-10 68.9 40 85.0
SGA_v2.0_scaffold60G21045 Striga asiatica HOM05D000607 ORTHO05D000518 2.7e-10 68.9 40 87.5
Cc02_g02980 Coffea canephora HOM05D000607 ORTHO05D000518 3.5e-10 68.6 40 87.5
Psat7g192880 Pisum sativum HOM05D000607 ORTHO05D000518 3.5e-10 68.6 40 82.5
Psat7g192960 Pisum sativum HOM05D000607 ORTHO05D000518 3.5e-10 68.6 40 82.5
TAR636G0390 Trochodendron aralioides HOM05D000607 ORTHO05D000518 3.5e-10 68.6 43 79.1
MSTRG.8457 Avicennia marina HOM05D000607 ORTHO05D000518 4.6e-10 68.2 43 79.1
A06p34650 Brassica napus HOM05D000607 ORTHO05D000518 4.6e-10 68.2 41 87.8
PSO478G3266 Papaver somniferum HOM05D000607 ORTHO05D000518 4.6e-10 68.2 43 74.4
PSO782G3265 Papaver somniferum HOM05D000607 ORTHO05D000518 4.6e-10 68.2 43 74.4
Zm00001eb404100 Zea mays HOM05D000607 ORTHO05D000518 4.6e-10 68.2 43 76.7
MSTRG.91 Avicennia marina HOM05D000607 ORTHO05D000518 6.0e-10 67.8 40 80.0
Os10g0506100 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 6.0e-10 67.8 42 83.3
TAR636G2948 Trochodendron aralioides HOM05D000607 ORTHO05D000518 6.0e-10 67.8 43 74.4
arahy.Tifrunner.gnm1.ann1.S3TF80 Arachis hypogaea HOM05D000607 ORTHO05D000518 7.8e-10 67.4 43 83.7
Cc08_g14460 Coffea canephora HOM05D000607 ORTHO05D000518 7.8e-10 67.4 43 74.4
Nn1g01468 Nelumbo nucifera HOM05D000607 ORTHO05D000518 7.8e-10 67.4 43 83.7
CAN.G490.33 Capsicum annuum HOM05D000607 ORTHO05D000518 1.0e-09 67.0 41 80.5
SalBow4G0149 Salvia bowleyana HOM05D000607 ORTHO05D000518 1.0e-09 67.0 40 85.0
SalBow4G2098 Salvia bowleyana HOM05D000607 ORTHO05D000518 1.0e-09 67.0 40 85.0
Psat6g198560 Pisum sativum HOM05D000607 ORTHO05D000518 1.3e-09 66.6 43 74.4
VMungo0720G0520 Vigna mungo HOM05D000607 ORTHO05D000518 1.3e-09 66.6 43 76.7
C09p07520 Brassica napus HOM05D000607 ORTHO05D000518 1.7e-09 66.2 40 87.5
BolC7t44913H Brassica oleracea HOM05D000607 ORTHO05D000518 1.7e-09 66.2 40 87.5
BolC9t53667H Brassica oleracea HOM05D000607 ORTHO05D000518 1.7e-09 66.2 40 87.5
Gohir.A12G227300 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.7e-09 66.2 43 72.1
Gohir.D12G229400 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.7e-09 66.2 43 74.4
Gorai.008G245700 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.7e-09 66.2 43 74.4
Peaxi162Scf00102g01540 Petunia axillaris HOM05D000607 ORTHO05D000518 1.7e-09 66.2 43 72.1
TAR367G0009 Trochodendron aralioides HOM05D000607 ORTHO05D000518 1.7e-09 66.2 43 72.1
CiPaw.11G137700 Carya illinoinensis HOM05D000607 ORTHO05D000518 2.3e-09 65.9 40 77.5
Migut.F00338 Erythranthe guttata HOM05D000607 ORTHO05D000518 2.3e-09 65.9 40 82.5
Lalb_Chr01g0009321 Lupinus albus HOM05D000607 ORTHO05D000518 2.3e-09 65.9 39 82.1
SGA_v2.0_scaffold44G16724 Striga asiatica HOM05D000607 ORTHO05D000518 2.3e-09 65.9 40 80.0
MD07G1270400 Malus domestica HOM05D000607 ORTHO05D000518 3.0e-09 65.5 34 94.1
Oeu024221.1 Olea europaea HOM05D000607 ORTHO05D000518 3.0e-09 65.5 39 84.6
Solyc03g025800.3 Solanum lycopersicum HOM05D000607 ORTHO05D000518 3.0e-09 65.5 39 82.1
Sopen03g004610 Solanum pennellii HOM05D000607 ORTHO05D000518 3.0e-09 65.5 39 82.1
C07p43850 Brassica napus HOM05D000607 ORTHO05D000518 3.9e-09 65.1 40 85.0
BraA09t36323Z Brassica rapa HOM05D000607 ORTHO05D000518 5.1e-09 64.7 39 87.2
MBI18_g37164_MAGBIO Magnolia biondii HOM05D000607 ORTHO05D000518 5.1e-09 64.7 43 74.4
MD06G1080000 Malus domestica HOM05D000607 ORTHO05D000518 5.1e-09 64.7 40 75.0
Zm00001eb044060 Zea mays HOM05D000607 ORTHO05D000518 5.1e-09 64.7 41 80.5
Ca_10768_v3 Cicer arietinum L. HOM05D000607 ORTHO05D000518 6.6e-09 64.3 40 77.5
arahy.Tifrunner.gnm1.ann1.QHK7TD Arachis hypogaea HOM05D000607 ORTHO05D000518 8.7e-09 63.9 40 77.5
Ciclev10023788m.g Citrus clementina HOM05D000607 ORTHO05D000518 8.7e-09 63.9 38 81.6
Lalb_Chr21g0305041 Lupinus albus HOM05D000607 ORTHO05D000518 8.7e-09 63.9 39 82.1
PGR031G3795 Punica granatum HOM05D000607 ORTHO05D000518 8.7e-09 63.9 40 72.5
TAR636G2619 Trochodendron aralioides HOM05D000607 ORTHO05D000518 8.7e-09 63.9 42 71.4
Gorai.008G245900 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.1e-08 63.5 39 76.9
arahy.Tifrunner.gnm1.ann1.U9GE21 Arachis hypogaea HOM05D000607 ORTHO05D000518 2.5e-08 62.4 40 75.0
Eucgr.D01867 Eucalyptus grandis HOM05D000607 ORTHO05D000518 2.5e-08 62.4 40 72.5
Thecc.03G276200 Theobroma cacao HOM05D000607 ORTHO05D000518 2.5e-08 62.4 40 72.5
Atru.chr9.2213 Acer truncatum HOM05D000607 ORTHO05D000518 4.3e-08 61.6 61 50.8
ATR1126G057 Amborella trichopoda HOM05D000607 ORTHO05D000518 4.3e-08 61.6 43 65.1
MSTRG.8735 Avicennia marina HOM05D000607 ORTHO05D000518 4.3e-08 61.6 41 75.6
MD07G1270100 Malus domestica HOM05D000607 ORTHO05D000518 4.3e-08 61.6 31 96.8
TPR.G14333 Trifolium pratense HOM05D000071 ORTHO05D000029 4.3e-08 61.6 40 72.5
AT5G23760 Arabidopsis thaliana HOM05D000607 ORTHO05D000518 5.6e-08 61.2 31 93.5
Cpa.g.sc107.55 Carica papaya HOM05D000607 ORTHO05D000518 7.3e-08 60.8 31 93.5
TAR374G1069 Trochodendron aralioides HOM05D000607 ORTHO05D000518 7.3e-08 60.8 38 71.1
Migut.F01118 Erythranthe guttata HOM05D000607 ORTHO05D000518 9.6e-08 60.5 36 75.0
Oeu056258.1 Olea europaea HOM05D000607 ORTHO05D000518 9.6e-08 60.5 34 82.4
Duzib068G0051 Durio zibethinus HOM05D000607 ORTHO05D000518 1.3e-07 60.1 30 96.7
HanXRQChr15g0495531 Helianthus annuus HOM05D000607 ORTHO05D000518 1.3e-07 60.1 40 72.5
DCAR_014513 Daucus carota HOM05D000607 ORTHO05D000518 1.6e-07 59.7 42 69.0
Os04g0533900 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 6.2e-07 57.8 40 72.5
Atru.chr9.2215 Acer truncatum HOM05D000607 ORTHO05D000518 1.8e-06 56.2 36 69.4
CDE09G0370 Ceratophyllum demersum HOM05D000607 ORTHO05D000518 1.8e-06 56.2 40 67.5
CDE11G0981 Ceratophyllum demersum HOM05D000607 ORTHO05D000518 1.8e-06 56.2 40 67.5
SalBow2G0992 Salvia bowleyana HOM05D000607 ORTHO05D000518 2.4e-06 55.8 31 83.9
unitig_0.g2477 Utricularia gibba HOM05D000607 ORTHO05D000518 2.4e-06 55.8 40 62.5
TWI39G1228 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 3.1e-06 55.5 40 77.5
A09p06780 Brassica napus HOM05D000607 ORTHO05D000518 4.0e-06 55.1 32 87.5
BraA06t26392Z Brassica rapa HOM05D000607 ORTHO05D000518 4.0e-06 55.1 32 87.5
Gohir.A12G227100 Gossypium hirsutum HOM05D000607 ORTHO05D000518 4.0e-06 55.1 33 75.8
Gohir.D12G229600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 4.0e-06 55.1 33 75.8
DCAR_010312 Daucus carota HOM05D000607 ORTHO05D000518 6.9e-06 54.3 33 75.8


User provided reference genes

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