Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 1.6e-294 1015.4 535 100.0
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 5.1e-256 887.5 542 86.0
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 6.9e-245 850.5 535 82.4
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.6e-241 838.2 535 81.1
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.2e-236 823.2 535 80.0
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 2.4e-229 798.9 510 81.0
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 1.2e-223 780.0 548 75.7
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 5.7e-223 777.7 541 76.7
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.1e-221 771.5 535 76.1
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 1.4e-216 756.5 556 74.3
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 3.0e-216 755.4 550 73.3
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.5e-215 753.1 532 74.1
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 4.4e-215 751.5 521 74.3
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 5.7e-215 751.1 549 72.5
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 6.3e-214 747.7 508 75.6
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 8.3e-214 747.3 515 74.8
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 1.4e-213 746.5 494 76.9
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 1.8e-213 746.1 550 72.5
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 1.8e-213 746.1 499 76.4
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 6.6e-211 737.6 518 73.4
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 4.3e-210 734.9 550 71.8
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 8.0e-209 730.7 552 71.0
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 1.4e-208 729.9 550 70.7
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 3.4e-207 725.3 465 79.4
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 5.7e-207 724.5 517 72.1
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 5.7e-207 724.5 465 78.1
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 5.7e-207 724.5 483 76.2
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 1.1e-205 720.3 534 70.6
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.4e-205 719.9 507 71.6
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 2.4e-205 719.2 518 73.0
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 5.4e-205 718.0 507 71.8
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 5.4e-205 718.0 483 75.4
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 7.0e-205 717.6 507 71.4
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.2e-204 716.8 477 75.7
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 1.6e-204 716.5 546 68.7
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 1.0e-203 713.8 530 69.4
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.0e-203 713.8 530 70.0
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 3.0e-203 712.2 475 75.2
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 3.3e-202 708.8 548 68.1
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 1.6e-201 706.4 486 74.5
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.6e-201 706.4 496 72.4
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 8.0e-201 704.1 503 71.6
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.4e-200 703.4 538 68.6
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 4.0e-200 701.8 526 68.4
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 1.4e-197 693.3 495 70.3
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 1.9e-197 693.0 502 72.1
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 2.4e-197 692.6 474 73.0
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 9.2e-197 690.6 494 71.3
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.5e-194 683.3 460 73.3
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 1.5e-194 683.3 531 67.0
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 3.3e-194 682.2 540 65.9
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 7.3e-194 681.0 459 74.1
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 7.3e-194 681.0 487 70.8
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 1.2e-193 680.2 461 73.1
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.8e-193 679.1 518 65.8
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 2.8e-193 679.1 539 66.6
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 6.2e-193 677.9 460 72.4
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.4e-192 676.8 487 70.6
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 2.3e-192 676.0 516 67.4
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 4.0e-192 675.2 503 70.4
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 2.6e-191 672.5 515 64.9
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 3.4e-191 672.2 545 65.5
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 5.8e-191 671.4 538 64.1
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 2.1e-188 662.9 440 75.0
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 6.2e-185 651.4 443 72.0
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 6.2e-185 651.4 529 64.5
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.8e-184 649.8 559 64.8
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 4.0e-184 648.7 463 70.0
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 1.2e-183 647.1 539 63.3
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.5e-183 646.7 520 62.1
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 4.9e-182 641.7 463 68.0
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 5.4e-181 638.3 463 67.8
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 9.2e-181 637.5 524 61.6
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.2e-180 637.1 463 67.4
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 3.5e-180 635.6 463 68.3
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 3.5e-180 635.6 459 69.7
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 7.8e-180 634.4 461 67.9
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 3.9e-179 632.1 463 66.7
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 5.1e-179 631.7 463 67.6
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 1.9e-178 629.8 562 57.7
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 1.9e-178 629.8 476 66.2
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 3.6e-177 625.5 465 66.9
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 4.7e-177 625.2 463 67.0
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 9.9e-175 617.5 540 60.4
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.1e-173 614.0 540 60.0
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.3e-171 607.1 525 59.2
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.3e-166 590.5 439 66.5
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 1.4e-165 587.0 459 65.1
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 1.4e-165 587.0 439 66.1
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 1.2e-164 583.9 547 58.3
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.8e-163 580.1 489 59.7
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.0e-163 579.3 370 79.7
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 6.9e-160 568.2 464 62.7
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 3.5e-156 555.8 500 58.4
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 4.3e-154 548.9 488 60.5
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 1.6e-153 547.0 488 59.8
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 6.2e-153 545.0 451 59.6
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 1.9e-149 533.5 373 71.6
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 2.7e-148 529.6 470 61.5
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 2.8e-137 493.0 358 66.5
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 5.0e-134 482.3 451 51.0
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.4e-133 480.7 443 63.2
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.4e-131 474.2 366 64.5
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 3.8e-126 456.1 466 48.5
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 9.4e-125 451.4 462 49.4
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 1.1e-122 444.5 452 48.9
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 5.3e-120 435.6 455 47.9
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 1.7e-113 414.1 494 44.1
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 1.7e-105 387.5 439 43.7
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 9.5e-69 265.4 464 30.8
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 1.3e-62 245.0 425 33.2
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 7.1e-56 222.6 135 77.8
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 1.3e-52 211.8 388 41.0
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 4.0e-51 206.8 137 73.7
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 3.1e-43 180.6 145 64.1
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.9e-40 171.4 262 42.7
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 5.6e-37 159.8 107 77.6
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 5.5e-32 143.3 463 24.4
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 3.3e-29 134.0 92 70.7
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 1.8e-27 128.3 94 70.2
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 3.6e-23 114.0 114 60.5
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 8.8e-22 109.4 68 79.4
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 4.3e-21 107.1 195 35.4
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.4e-19 102.1 220 33.2
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 1.4e-19 102.1 208 34.6
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.9e-17 94.4 119 49.6
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 2.8e-12 77.8 79 55.7
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 5.3e-11 73.6 53 64.2
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 5.9e-10 70.1 423 21.0
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 6.1e-07 60.1 43 69.8


User provided reference genes

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