Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 3.9e-56 221.9 143 100.0
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 1.1e-23 114.0 158 64.6
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 4.6e-17 92.0 70 55.7
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 1.8e-16 90.1 68 57.4
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 6.7e-16 88.2 99 48.5
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 6.7e-16 88.2 69 55.1
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 1.1e-15 87.4 103 43.7
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 5.7e-15 85.1 98 44.9
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.3e-14 84.0 69 53.6
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 1.3e-14 84.0 139 59.0
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 1.6e-14 83.6 70 58.6
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 3.7e-14 82.4 67 49.3
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 3.7e-14 82.4 139 61.2
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 4.8e-14 82.0 70 55.7
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 4.8e-14 82.0 102 47.1
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 8.2e-14 81.3 93 45.2
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.1e-13 80.9 140 60.0
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.1e-13 80.9 99 44.4
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 1.4e-13 80.5 99 41.4
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 2.4e-13 79.7 76 48.7
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 2.4e-13 79.7 62 53.2
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.1e-13 79.3 99 43.4
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 3.1e-13 79.3 63 52.4
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 6.9e-13 78.2 139 59.0
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 9.0e-13 77.8 69 49.3
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 9.0e-13 77.8 144 48.6
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 1.2e-12 77.4 76 47.4
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 1.5e-12 77.0 96 40.6
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.6e-12 76.3 72 50.0
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 4.5e-12 75.5 95 42.1
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 4.5e-12 75.5 101 40.6
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 4.5e-12 75.5 107 42.1
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 5.8e-12 75.1 67 47.8
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 5.8e-12 75.1 68 48.5
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 5.8e-12 75.1 90 38.9
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 7.6e-12 74.7 100 42.0
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 7.6e-12 74.7 99 47.5
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 1.7e-11 73.6 67 50.7
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 2.2e-11 73.2 76 43.4
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 5.0e-11 72.0 59 52.5
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 1.4e-10 70.5 90 42.2
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.9e-10 70.1 95 40.0
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 2.5e-10 69.7 95 44.2
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 4.2e-10 68.9 103 43.7
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 5.5e-10 68.6 69 44.9
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 7.1e-10 68.2 107 38.3
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 7.1e-10 68.2 152 57.9
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 9.3e-10 67.8 101 40.6
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 1.6e-09 67.0 62 46.8
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 2.7e-09 66.2 99 45.5
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 3.5e-09 65.9 91 39.6
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 4.6e-09 65.5 100 41.0
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.0e-08 64.3 102 36.3
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.0e-08 64.3 88 40.9
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-08 63.9 103 36.9
AL1G58320 Arabidopsis lyrata HOM05D012777 ORTHO05D009905 1.8e-08 63.5 96 38.5
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 2.3e-08 63.2 73 42.5
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 3.9e-08 62.4 95 40.0
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.1e-07 60.8 86 37.2
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-07 60.8 44 54.5
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-07 60.8 44 54.5
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-07 60.8 44 54.5
AT1G50650 Arabidopsis thaliana HOM05D012777 ORTHO05D009905 1.5e-07 60.5 96 38.5
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 2.5e-07 59.7 93 34.4
Thhalv10012178m.g Eutrema salsugineum HOM05D012777 ORTHO05D009905 3.3e-07 59.3 97 34.0
Carub.0001s3969 Capsella rubella HOM05D012777 ORTHO05D009905 7.4e-07 58.2 98 33.7
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 7.4e-07 58.2 93 35.5
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-06 57.0 93 35.5
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 3.7e-06 55.8 93 37.6
CARHR040700 Cardamine hirsuta HOM05D012777 ORTHO05D009905 8.2e-06 54.7 95 36.8
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 8.2e-06 54.7 91 37.4


User provided reference genes

Program Settings