Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 4.6e-32 140.6 69 100.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 5.2e-28 127.1 70 91.4
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.5e-27 125.6 67 89.6
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.5e-27 125.6 67 89.6
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 3.4e-27 124.4 67 88.1
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 3.4e-27 124.4 67 88.1
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 7.6e-27 123.2 67 86.6
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 9.9e-27 122.9 67 88.1
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.7e-26 122.1 60 96.7
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.1e-25 119.4 67 83.6
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 1.9e-25 118.6 67 86.6
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.9e-23 110.9 60 83.3
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 5.1e-23 110.5 62 82.3
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 6.6e-23 110.2 60 83.3
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.9e-22 108.6 60 81.7
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.5e-22 108.2 67 73.1
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 2.5e-22 108.2 60 81.7
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 2.5e-22 108.2 59 83.1
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 2.5e-22 108.2 60 81.7
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 2.5e-22 108.2 58 82.8
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.3e-22 107.8 59 83.1
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 4.3e-22 107.5 60 81.7
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 4.3e-22 107.5 58 86.2
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 4.3e-22 107.5 60 78.3
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 5.6e-22 107.1 61 86.9
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 5.6e-22 107.1 58 81.0
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 7.3e-22 106.7 60 76.7
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 7.3e-22 106.7 67 73.1
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 7.3e-22 106.7 67 73.1
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 7.3e-22 106.7 67 73.1
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 9.6e-22 106.3 67 73.1
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 1.2e-21 105.9 60 80.0
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.2e-21 105.9 66 72.7
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.2e-21 105.9 66 72.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.2e-21 105.9 67 73.1
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 1.2e-21 105.9 58 81.0
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.6e-21 105.5 60 78.3
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 2.1e-21 105.1 67 73.1
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 2.8e-21 104.8 58 81.0
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 2.8e-21 104.8 58 79.3
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 2.8e-21 104.8 58 79.3
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 2.8e-21 104.8 66 75.8
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.6e-21 104.4 66 71.2
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 3.6e-21 104.4 60 80.0
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 3.6e-21 104.4 60 76.7
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 3.6e-21 104.4 67 71.6
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 4.7e-21 104.0 68 70.6
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.7e-21 104.0 68 70.6
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 4.7e-21 104.0 68 70.6
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 4.7e-21 104.0 68 70.6
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 4.7e-21 104.0 68 70.6
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 4.7e-21 104.0 58 77.6
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 4.7e-21 104.0 58 77.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 4.7e-21 104.0 58 82.8
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 6.2e-21 103.6 68 70.6
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 6.2e-21 103.6 68 70.6
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 6.2e-21 103.6 68 70.6
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.2e-21 103.6 67 71.6
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 6.2e-21 103.6 58 77.6
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 6.2e-21 103.6 67 68.7
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 8.1e-21 103.2 68 72.1
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 8.1e-21 103.2 60 75.0
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 8.1e-21 103.2 60 75.0
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 8.1e-21 103.2 60 75.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 8.1e-21 103.2 63 74.6
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 8.1e-21 103.2 67 67.2
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 81.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 81.0
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 81.0
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 81.0
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.1e-20 102.8 58 81.0
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 1.4e-20 102.4 69 71.0
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.8e-20 102.1 67 71.6
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 79.3
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 79.3
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 79.3
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 79.3
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 3.1e-20 101.3 58 81.0
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 3.1e-20 101.3 58 81.0
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 3.1e-20 101.3 58 77.6
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 4.0e-20 100.9 58 77.6
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 5.2e-20 100.5 58 77.6
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.2e-20 100.5 58 77.6
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 6.9e-20 100.1 58 79.3
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 8.9e-20 99.8 58 75.9
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 8.9e-20 99.8 58 81.0
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.2e-19 99.4 67 71.6
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.2e-19 99.4 67 71.6
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.2e-19 99.4 58 75.9
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 1.2e-19 99.4 58 75.9
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.5e-19 99.0 66 66.7
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.4e-19 97.4 67 64.2
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 7.6e-19 96.7 60 73.3
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 7.6e-19 96.7 58 75.9
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 7.6e-19 96.7 58 75.9
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 7.6e-19 96.7 58 75.9
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 7.6e-19 96.7 58 75.9
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 9.9e-19 96.3 58 75.9
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.7e-18 95.5 58 74.1
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 2.2e-18 95.1 58 72.4
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 2.9e-18 94.7 59 74.6
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 2.9e-18 94.7 59 74.6
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 4.9e-18 94.0 68 60.3
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 1.1e-17 92.8 50 84.0
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 7.1e-17 90.1 56 75.0
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 1.2e-16 89.4 50 80.0
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 2.7e-16 88.2 50 78.0
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 2.7e-16 88.2 67 59.7
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 2.3e-15 85.1 50 76.0
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 3.3e-14 81.3 52 69.2
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 6.9e-12 73.6 47 72.3
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.8e-07 58.9 59 45.8


User provided reference genes

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