Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 0.0e+00 1357.8 674 100.0
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 9.9e-265 916.8 675 70.2
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.1e-262 909.1 658 71.7
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 1.3e-256 889.8 647 71.3
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 3.0e-253 878.6 664 69.4
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.5e-239 831.2 656 67.5
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.8e-237 826.2 681 65.9
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 2.0e-233 812.8 683 64.4
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 5.0e-232 808.1 654 65.1
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 5.5e-231 804.7 666 64.3
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 8.2e-227 790.8 664 62.8
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.6e-222 775.4 584 68.7
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 8.8e-221 770.8 741 58.6
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.5e-220 770.0 675 61.3
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 2.4e-218 762.7 663 62.3
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 5.3e-218 761.5 671 60.7
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 2.9e-216 755.7 663 60.5
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.1e-215 753.8 668 61.2
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.2e-215 752.3 666 60.8
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 4.2e-215 751.9 670 60.7
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.2e-212 743.8 675 60.6
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 3.7e-211 738.8 652 59.0
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 8.3e-211 737.6 665 58.9
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 3.5e-209 732.3 606 64.4
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 5.9e-209 731.5 663 60.5
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 8.6e-208 727.6 666 59.9
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 1.5e-207 726.9 662 59.5
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 3.6e-206 722.2 666 59.8
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 6.1e-206 721.5 720 56.8
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 6.1e-206 721.5 678 58.0
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 1.0e-205 720.7 693 57.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.4e-205 720.3 662 59.4
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.8e-205 719.9 654 58.6
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.8e-205 719.9 663 58.5
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.8e-205 719.9 671 58.4
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.8e-205 719.9 713 57.1
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 8.9e-205 717.6 664 58.4
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 5.7e-204 714.9 683 55.8
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 7.5e-204 714.5 671 58.4
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 2.2e-203 713.0 674 58.5
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.7e-203 712.2 670 58.4
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 3.7e-203 712.2 692 57.4
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 4.9e-203 711.8 672 58.5
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 6.3e-203 711.4 681 58.0
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 1.1e-202 710.7 650 59.4
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 4.1e-202 708.8 658 57.9
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 4.1e-202 708.8 666 57.5
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 9.2e-202 707.6 669 59.0
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 2.7e-201 706.1 676 58.0
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 5.9e-201 704.9 676 58.1
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 5.9e-201 704.9 649 59.3
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 2.9e-200 702.6 673 57.9
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 3.8e-200 702.2 672 58.2
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.5e-199 700.3 681 55.5
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.2e-198 697.2 670 57.6
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.1e-198 696.4 703 55.8
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.0e-198 694.5 670 57.3
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.9e-197 691.0 670 57.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 2.0e-196 689.9 660 57.6
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.0e-196 689.9 673 57.1
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 3.4e-196 689.1 669 57.4
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 3.4e-196 689.1 669 57.4
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 4.9e-195 685.3 678 57.2
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.1e-194 684.1 680 56.5
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 2.4e-194 682.9 668 57.8
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 5.4e-194 681.8 671 56.8
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 9.2e-194 681.0 663 57.2
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 7.8e-193 677.9 659 57.1
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 1.1e-191 674.1 662 57.1
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 2.5e-191 672.9 663 56.6
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 3.3e-191 672.5 687 54.9
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 4.3e-191 672.2 675 56.3
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 4.3e-191 672.2 653 57.1
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 2.8e-190 669.5 674 55.2
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.8e-190 669.5 677 55.4
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 5.2e-189 665.2 676 54.4
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.5e-188 663.7 692 53.9
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 5.8e-188 661.8 678 54.7
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 2.2e-187 659.8 670 54.6
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.1e-186 657.5 692 53.8
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.1e-186 657.5 670 55.7
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 1.9e-186 656.8 668 54.8
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 7.0e-186 654.8 684 53.5
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.2e-185 654.1 686 53.9
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.6e-185 653.7 676 54.0
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 3.5e-185 652.5 666 55.1
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 4.6e-185 652.1 668 54.6
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 1.3e-184 650.6 677 54.2
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 1.7e-184 650.2 673 55.7
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 5.0e-184 648.7 641 55.9
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.1e-183 647.5 678 54.6
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 2.5e-183 646.4 672 55.1
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 5.6e-183 645.2 678 53.5
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 5.6e-183 645.2 671 54.2
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.2e-182 644.0 668 54.3
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 3.6e-182 642.5 646 55.1
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 1.4e-181 640.6 678 54.4
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 1.4e-181 640.6 679 53.6
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 5.2e-181 638.6 678 54.3
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 6.8e-181 638.3 673 53.0
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 6.8e-181 638.3 672 53.9
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 8.9e-181 637.9 677 53.3
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 8.9e-181 637.9 643 54.7
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.4e-180 636.0 672 53.1
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 5.8e-180 635.2 687 53.3
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 7.5e-180 634.8 655 54.4
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 1.7e-179 633.6 691 52.4
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.7e-179 633.6 710 51.8
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 8.3e-179 631.3 701 52.9
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.1e-177 626.7 505 66.9
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 2.3e-176 623.2 668 53.4
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 3.0e-176 622.9 668 54.0
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 5.1e-176 622.1 670 53.0
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 5.6e-175 618.6 668 53.0
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 1.6e-174 617.1 584 56.3
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 4.0e-173 612.5 681 52.7
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 1.2e-172 610.9 604 55.6
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.5e-172 610.5 694 52.3
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 5.8e-172 608.6 678 51.3
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.7e-168 597.0 637 53.4
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.5e-167 593.2 681 51.7
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.1e-159 567.8 690 50.7
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.9e-159 567.0 659 50.1
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 2.8e-158 563.1 514 59.7
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 4.0e-157 559.3 403 69.5
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 4.0e-157 559.3 667 48.7
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.1e-154 551.2 550 56.9
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.2e-153 547.7 495 61.6
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 6.4e-147 525.4 498 56.0
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 1.4e-146 524.2 657 49.9
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.8e-144 517.3 682 47.4
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 2.5e-143 513.5 523 55.3
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 3.1e-133 479.9 650 45.7
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.4e-130 468.4 349 67.9
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 4.6e-129 466.1 606 47.7
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.3e-126 458.0 525 50.5
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 6.3e-118 429.1 486 51.6
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 2.0e-116 424.1 466 54.7
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 2.9e-115 420.2 692 41.0
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 7.2e-114 415.6 692 40.6
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.8e-110 403.7 438 51.4
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 4.5e-108 396.4 445 52.8
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 7.7e-108 395.6 658 41.0
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.7e-107 394.4 558 43.9
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 7.2e-106 389.0 356 63.2
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 9.4e-106 388.7 290 72.1
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 8.0e-105 385.6 569 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 4.8e-102 376.3 718 38.6
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 3.0e-96 357.1 375 56.3
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 2.3e-91 340.9 259 71.0
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.6e-89 334.7 279 60.2
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.2e-84 318.5 777 33.2
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.0e-83 315.5 699 34.9
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 7.1e-69 266.2 638 33.5
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 9.5e-66 255.8 313 44.7
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.1e-64 252.3 631 33.6
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 2.1e-60 238.0 258 56.2
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 4.7e-57 226.9 415 39.0
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 2.1e-52 211.5 185 57.3
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.6e-50 203.4 210 52.4
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 6.0e-44 183.3 223 53.4
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 5.1e-43 180.3 164 66.5
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 9.6e-42 176.0 716 27.5
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.1e-34 152.5 257 38.5
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.6e-28 132.1 88 67.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 3.1e-24 117.9 107 57.0
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 3.8e-22 110.9 131 48.9
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.1e-19 100.5 95 55.8
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 1.6e-17 95.5 78 57.7
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 3.7e-17 94.4 61 77.0
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 9.0e-16 89.7 120 45.8
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.2e-15 89.4 88 51.1
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.4e-15 87.8 94 54.3
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 2.1e-12 78.6 47 70.2
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 3.0e-11 74.7 94 56.4
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 6.7e-11 73.6 80 56.2
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 4.3e-10 70.9 84 46.4
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 4.3e-10 70.9 59 59.3
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.4e-10 70.1 48 66.7
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 7.4e-10 70.1 50 66.0
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 1.3e-09 69.3 113 37.2
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-08 65.9 41 75.6
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 3.1e-08 64.7 82 43.9
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 2.6e-07 61.6 46 58.7
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 2.2e-06 58.5 49 57.1
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 5.0e-06 57.4 87 41.4


User provided reference genes

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