Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 7.8e-99 364.0 212 100.0
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 1.6e-59 233.4 223 65.0
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 2.3e-58 229.6 221 63.8
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 3.3e-57 225.7 224 58.5
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 7.4e-57 224.6 217 64.1
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 6.9e-55 218.0 230 57.4
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 9.0e-55 217.6 230 57.8
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 2.0e-54 216.5 230 57.0
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.2e-52 209.1 226 56.2
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.2e-52 209.1 226 56.2
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.5e-52 208.4 220 57.3
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 2.5e-49 199.5 213 58.2
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 9.1e-47 191.0 213 56.3
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 1.5e-46 190.3 213 55.4
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 1.5e-46 190.3 212 56.6
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 1.3e-45 187.2 216 57.9
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 2.9e-45 186.0 217 55.3
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 1.2e-43 180.6 218 52.3
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 1.0e-42 177.6 216 51.9
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 1.0e-42 177.6 217 52.5
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 1.8e-42 176.8 214 53.7
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 1.8e-42 176.8 215 54.4
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 1.8e-42 176.8 213 54.5
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 6.7e-42 174.9 209 55.5
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 7.4e-41 171.4 215 54.9
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 2.8e-40 169.5 204 52.9
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 2.8e-40 169.5 220 50.9
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 6.3e-40 168.3 216 53.7
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 8.2e-40 167.9 217 51.6
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.8e-39 166.8 215 54.4
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 3.1e-39 166.0 218 47.7
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 7.0e-39 164.9 211 53.6
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 2.0e-38 163.3 222 49.5
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 1.3e-37 160.6 216 50.5
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 1.1e-36 157.5 201 54.7
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 1.5e-36 157.1 225 47.1
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 3.2e-36 156.0 223 49.3
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 8.0e-35 151.4 201 49.8
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 2.3e-34 149.8 216 47.7
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 4.0e-34 149.1 197 50.3
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 4.0e-34 149.1 205 50.2
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 4.0e-34 149.1 212 50.5
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 5.2e-34 148.7 212 47.2
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 1.5e-33 147.1 200 50.5
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 2.6e-33 146.4 233 45.5
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 3.3e-33 146.0 212 44.3
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 7.5e-33 144.8 201 49.3
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 3.7e-32 142.5 227 47.6
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 3.7e-32 142.5 202 48.5
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 3.7e-32 142.5 218 46.3
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 4.8e-32 142.1 206 47.1
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 6.3e-32 141.7 217 47.9
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 6.3e-32 141.7 201 48.3
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 6.3e-32 141.7 203 48.8
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 8.2e-32 141.4 202 48.0
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.8e-31 140.2 213 45.5
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 3.1e-31 139.4 213 43.2
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 4.1e-31 139.0 203 44.8
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 5.3e-31 138.7 220 45.5
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 7.0e-31 138.3 212 46.7
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 3.5e-30 136.0 207 44.9
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 7.7e-30 134.8 207 44.0
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 5.0e-29 132.1 233 41.6
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 5.0e-29 132.1 187 46.5
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 7.2e-28 128.3 209 44.5
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.6e-27 127.1 203 42.9
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 3.6e-27 125.9 219 44.3
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 2.3e-26 123.2 197 44.2
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 3.4e-25 119.4 204 43.6
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 7.5e-25 118.2 231 40.3
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.7e-24 117.1 108 63.9
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.7e-24 117.1 216 41.2
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 1.1e-23 114.4 218 39.0
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 3.1e-23 112.8 155 48.4
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 5.4e-23 112.1 188 42.0
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.2e-22 110.9 204 43.1
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 1.6e-22 110.5 196 42.3
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 2.0e-22 110.2 103 59.2
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.0e-21 107.8 197 40.1
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 2.2e-21 106.7 214 39.3
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 2.9e-21 106.3 196 42.9
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 6.5e-21 105.1 200 42.0
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 1.5e-20 104.0 202 40.6
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 1.9e-20 103.6 196 43.4
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 2.5e-20 103.2 198 41.9
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 2.0e-17 93.6 210 35.7
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.3e-16 90.9 202 37.6
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 2.8e-16 89.7 201 36.3
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 2.4e-15 86.7 85 54.1
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 2.0e-14 83.6 84 53.6
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 2.0e-14 83.6 162 40.7
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 2.7e-14 83.2 154 46.1
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 1.7e-13 80.5 213 34.3
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 5.7e-09 65.5 185 33.0
Os01g0532300 Oryza sativa ssp. japonica HOM05D007542 ORTHO05D009519 7.8e-06 55.1 225 32.0


User provided reference genes

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