Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 0.0e+00 1158.3 580 100.0
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 0.0e+00 1090.9 580 94.3
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 2.2e-300 1035.0 585 89.9
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.1e-295 1016.9 589 88.1
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.3e-294 1015.0 592 87.8
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.1e-294 1013.8 603 86.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.3e-293 1011.1 583 86.8
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 4.5e-290 1000.7 593 85.5
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 7.7e-290 1000.0 593 85.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.8e-289 997.7 592 85.1
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.4e-288 995.7 585 85.5
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 7.2e-288 993.4 591 84.9
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.2e-287 992.6 594 84.0
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.1e-287 991.9 588 85.5
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 6.1e-287 990.3 597 84.4
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.0e-286 989.6 587 85.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.3e-286 988.4 580 85.2
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.1e-285 986.1 610 83.0
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 2.6e-285 984.9 601 83.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 7.4e-285 983.4 589 84.4
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 1.3e-284 982.6 597 83.2
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.8e-284 981.5 589 84.6
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.1e-283 979.5 590 83.7
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.8e-283 978.8 581 84.7
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 7.0e-283 976.9 589 83.4
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 7.0e-283 976.9 597 82.9
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 9.1e-283 976.5 589 83.9
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 4.5e-282 974.2 591 83.1
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 7.7e-282 973.4 589 82.3
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.9e-281 971.5 545 87.9
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 2.9e-281 971.5 591 82.2
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 1.9e-280 968.8 589 82.5
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.6e-279 965.7 580 83.6
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.7e-279 964.9 575 84.5
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.7e-279 964.9 590 81.0
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 4.7e-279 964.1 583 82.2
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 8.0e-279 963.4 575 84.3
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.0e-278 963.0 584 81.5
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.4e-278 962.6 589 82.2
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 1.4e-278 962.6 589 82.5
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.8e-278 962.2 579 83.4
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.3e-278 961.8 580 83.1
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.0e-278 961.4 590 80.7
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 4.0e-278 961.1 570 84.6
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 4.0e-278 961.1 576 83.7
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 5.2e-278 960.7 581 82.3
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 6.7e-278 960.3 588 83.0
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.5e-277 959.1 583 81.3
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 2.0e-277 958.7 589 82.0
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 4.4e-277 957.6 582 81.4
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 4.4e-277 957.6 589 82.3
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 4.4e-277 957.6 587 80.9
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 5.7e-277 957.2 571 82.3
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.7e-277 957.2 590 82.4
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 7.5e-277 956.8 590 82.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 7.5e-277 956.8 580 83.1
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.3e-276 956.1 604 80.5
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 1.7e-276 955.7 580 81.9
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 2.2e-276 955.3 564 83.7
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 3.7e-276 954.5 572 83.2
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 3.7e-276 954.5 580 81.4
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 4.8e-276 954.1 583 82.2
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 8.2e-276 953.4 587 81.8
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.8e-275 952.2 582 84.4
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 5.3e-275 950.7 581 82.1
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 5.3e-275 950.7 585 82.4
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 7.0e-275 950.3 584 81.0
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 7.0e-275 950.3 608 80.6
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.6e-274 949.1 579 81.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 1.6e-274 949.1 589 81.3
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 2.0e-274 948.7 583 81.3
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 7.7e-274 946.8 582 80.9
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.0e-273 946.4 580 80.7
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 6.5e-273 943.7 589 81.0
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 5.5e-272 940.6 587 81.9
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 6.1e-271 937.2 585 80.2
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 9.8e-269 929.9 568 82.7
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 3.7e-268 927.9 579 79.8
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 8.3e-268 926.8 584 80.1
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 5.4e-267 924.1 592 80.6
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 2.0e-266 922.2 596 77.2
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 5.9e-266 920.6 626 77.2
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 7.7e-266 920.2 576 80.7
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.8e-265 917.9 579 79.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 3.6e-263 911.4 613 76.8
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.1e-259 899.8 593 77.1
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 1.4e-259 899.4 585 78.1
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 5.6e-256 887.5 479 91.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.0e-254 883.2 584 75.5
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.8e-254 882.5 585 77.9
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.7e-252 875.9 585 77.4
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.9e-252 875.2 578 75.8
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 6.0e-250 867.5 575 77.9
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 3.0e-249 865.1 575 77.7
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 5.0e-249 864.4 653 70.4
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.9e-248 862.4 554 76.9
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 2.8e-247 858.6 518 83.0
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 6.2e-247 857.4 635 72.3
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 3.2e-243 845.1 576 75.5
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.1e-243 844.7 605 74.2
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.3e-241 839.7 544 78.1
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.2e-234 816.6 547 73.3
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.3e-233 812.4 562 74.7
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 9.9e-229 797.0 463 84.0
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.4e-227 793.1 481 82.5
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.4e-227 792.3 545 71.4
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 3.0e-225 785.4 572 69.8
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 9.0e-222 773.9 532 71.4
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 3.4e-221 771.9 563 68.2
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 6.2e-215 751.1 560 69.8
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.2e-211 738.4 560 68.9
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 5.5e-195 684.9 523 69.6
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 9.7e-192 674.1 405 83.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 3.2e-187 659.1 584 58.2
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.0e-180 635.2 341 94.1
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-165 587.4 410 74.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.6e-162 575.9 554 58.5
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.1e-158 564.3 510 57.3
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.4e-158 563.1 356 79.5
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.9e-155 553.5 544 52.9
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 5.0e-132 475.7 592 46.8
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 9.5e-131 471.5 257 91.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 3.8e-103 379.8 249 75.9
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.4e-102 377.9 250 78.4
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 2.4e-73 280.8 208 68.8
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 4.5e-72 276.6 405 45.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 5.3e-57 226.5 198 58.1
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 2.8e-50 204.1 148 73.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 4.2e-46 190.3 153 68.0
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 4.7e-45 186.8 116 80.2
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.0e-39 169.1 118 66.9
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 3.8e-39 167.2 102 78.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 2.7e-32 144.4 316 32.6
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 8.9e-28 129.4 312 33.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.3e-26 125.6 76 86.8
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.4e-20 105.5 85 65.9
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.1e-17 95.9 58 81.0
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 3.3e-14 84.3 43 88.4
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-13 82.4 105 46.7
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 2.1e-13 81.6 77 59.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 2.8e-13 81.3 46 71.7
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 5.8e-11 73.6 126 41.3
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.3e-10 72.4 42 76.2
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.7e-10 72.0 107 44.9
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 9.2e-09 66.2 70 60.0
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.3e-07 61.6 37 81.1
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 5.1e-07 60.5 35 74.3
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 2.5e-06 58.2 44 59.1
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 4.3e-06 57.4 55 60.0


User provided reference genes

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