Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 2.7e-55 218.4 109 100.0
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 5.3e-43 177.6 109 81.7
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 3.7e-36 154.8 109 73.4
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 2.4e-19 99.0 113 50.4
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 3.1e-19 98.6 108 47.2
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 2.7e-18 95.5 122 45.9
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 2.7e-18 95.5 100 51.0
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 7.8e-18 94.0 122 45.1
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 1.0e-17 93.6 113 46.9
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 1.0e-17 93.6 123 44.7
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 1.3e-17 93.2 112 47.3
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 2.9e-17 92.0 122 45.1
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 2.9e-17 92.0 122 43.4
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 1.9e-16 89.4 105 47.6
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 5.6e-16 87.8 121 43.8
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 5.6e-16 87.8 122 41.8
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 2.8e-15 85.5 118 42.4
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 6.1e-15 84.3 118 42.4
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 8.0e-15 84.0 108 45.4
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-14 83.2 107 41.1
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 1.4e-14 83.2 108 45.4
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 1.8e-14 82.8 121 41.3
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 2.3e-14 82.4 107 44.9
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 3.0e-14 82.0 123 42.3
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 3.0e-14 82.0 122 41.8
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 3.0e-14 82.0 122 41.8
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 8.9e-14 80.5 119 43.7
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 1.2e-13 80.1 119 35.3
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 1.2e-13 80.1 119 35.3
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 2.0e-13 79.3 117 41.0
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 2.6e-13 79.0 107 43.9
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 7.5e-13 77.4 119 39.5
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 9.8e-13 77.0 119 35.3
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-12 76.6 121 38.8
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-12 76.6 122 38.5
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 1.7e-12 76.3 108 42.6
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 2.9e-12 75.5 119 38.7
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 6.4e-12 74.3 108 39.8
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 6.4e-12 74.3 114 42.1
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.9e-11 72.8 118 39.0
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 1.9e-11 72.8 119 37.8
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 3.2e-11 72.0 122 38.5
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 3.2e-11 72.0 119 33.6
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 1.2e-10 70.1 120 33.3
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.0e-10 69.3 109 39.4
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-10 68.9 114 39.5
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 2.7e-10 68.9 121 32.2
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.5e-10 68.6 114 40.4
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 3.5e-10 68.6 119 36.1
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 7.8e-10 67.4 105 37.1
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 7.8e-10 67.4 113 34.5
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 7.8e-10 67.4 106 36.8
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.0e-09 67.0 108 37.0
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 1.0e-09 67.0 121 39.7
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 1.0e-09 67.0 106 35.8
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 1.3e-09 66.6 107 35.5
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 1.7e-09 66.2 115 40.0
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 3.9e-09 65.1 109 34.9
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 3.9e-09 65.1 92 39.1
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 1.5e-08 63.2 109 34.9
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 1.9e-08 62.8 115 38.3
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 4.3e-08 61.6 97 39.2
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 4.3e-08 61.6 117 28.2
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 5.6e-08 61.2 108 32.4
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 7.3e-08 60.8 102 34.3
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 7.3e-08 60.8 103 36.9
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 7.3e-08 60.8 115 32.2
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 1.2e-07 60.1 109 32.1
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 1.2e-07 60.1 112 34.8
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 1.6e-07 59.7 109 33.0
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 1.6e-07 59.7 115 33.0
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.1e-07 59.3 119 31.1
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 2.1e-07 59.3 106 32.1
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 2.1e-07 59.3 107 34.6
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 2.1e-07 59.3 102 37.3
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 2.8e-07 58.9 115 37.4
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 2.8e-07 58.9 108 32.4
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 2.8e-07 58.9 107 35.5
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 6.2e-07 57.8 109 32.1
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 6.2e-07 57.8 109 32.1
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 6.2e-07 57.8 107 31.8
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 8.0e-07 57.4 90 38.9
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 8.0e-07 57.4 105 34.3
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 1.1e-06 57.0 109 31.2
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 2.3e-06 55.8 104 29.8
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 2.3e-06 55.8 107 33.6
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 2.3e-06 55.8 122 31.1
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 2.3e-06 55.8 118 34.7
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 5.2e-06 54.7 108 30.6
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 6.8e-06 54.3 105 30.5
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 8.9e-06 53.9 108 30.6


User provided reference genes

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