Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 9.3e-182 640.2 350 100.0
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 4.6e-64 249.2 340 54.1
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 1.5e-43 181.0 109 81.7
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 8.3e-29 132.1 162 42.0
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 2.7e-27 127.1 162 41.4
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 2.9e-26 123.6 162 41.4
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 6.5e-26 122.5 146 45.2
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 6.5e-26 122.5 146 45.2
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 9.4e-25 118.6 135 44.4
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 1.2e-24 118.2 190 37.9
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 1.6e-24 117.9 131 47.3
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 1.6e-24 117.9 181 40.3
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 2.1e-24 117.5 136 44.9
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 4.7e-24 116.3 146 43.2
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 8.0e-24 115.5 134 47.0
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 1.0e-23 115.2 135 44.4
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 2.3e-23 114.0 136 43.4
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 2.3e-23 114.0 141 44.0
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 5.2e-23 112.8 127 44.9
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 1.2e-22 111.7 141 43.3
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 2.0e-22 110.9 201 40.3
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 4.4e-22 109.8 135 43.0
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 2.8e-21 107.1 162 34.6
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.7e-21 106.7 189 35.4
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 3.7e-21 106.7 162 34.6
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 4.8e-21 106.3 142 43.7
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 1.4e-20 104.8 127 43.3
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 2.4e-20 104.0 141 41.1
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 3.1e-20 103.6 134 41.8
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 4.1e-20 103.2 149 38.9
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 4.1e-20 103.2 138 41.3
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 5.4e-20 102.8 134 41.8
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 7.0e-20 102.4 138 41.3
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 1.2e-19 101.7 133 41.4
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 1.6e-19 101.3 100 51.0
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.9e-19 99.4 136 41.9
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 7.7e-19 99.0 131 40.5
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 1.0e-18 98.6 188 33.5
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 1.3e-18 98.2 148 37.8
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 2.9e-18 97.1 134 38.8
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 5.0e-18 96.3 166 32.5
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 1.5e-17 94.7 130 41.5
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-17 94.4 139 38.8
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 2.5e-17 94.0 130 40.8
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 7.2e-17 92.4 147 34.7
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 1.2e-16 91.7 163 36.2
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 1.6e-16 91.3 122 41.0
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 1.6e-16 91.3 110 43.6
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 1.6e-16 91.3 124 37.9
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 4.7e-16 89.7 126 39.7
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 4.7e-16 89.7 130 40.0
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 6.1e-16 89.4 137 39.4
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 1.0e-15 88.6 129 37.2
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-15 87.8 142 36.6
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-15 87.8 148 35.8
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.0e-15 86.7 192 31.2
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 5.2e-15 86.3 122 38.5
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 6.8e-15 85.9 155 34.2
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 6.8e-15 85.9 168 35.1
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 8.9e-15 85.5 128 39.8
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.2e-14 85.1 139 35.3
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 2.0e-14 84.3 131 31.3
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 7.5e-14 82.4 129 35.7
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 9.8e-14 82.0 129 34.1
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.2e-13 80.9 123 37.4
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 2.2e-13 80.9 170 30.6
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 2.8e-13 80.5 140 34.3
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 6.3e-13 79.3 125 34.4
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.1e-12 78.6 125 33.6
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 1.8e-12 77.8 128 34.4
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 1.8e-12 77.8 128 34.4
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-12 77.8 121 38.0
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 2.4e-12 77.4 97 42.3
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 5.4e-12 76.3 126 34.1
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 9.2e-12 75.5 117 37.6
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 2.0e-11 74.3 128 33.6
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 2.0e-11 74.3 116 39.7
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 2.0e-11 74.3 128 38.3
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 3.5e-11 73.6 128 31.2
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 4.5e-11 73.2 127 33.1
Prupe.8G120500 Prunus persica HOM05D007656 ORTHO05D008529 4.5e-11 73.2 125 33.6
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 7.8e-11 72.4 134 37.3
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 1.0e-10 72.0 139 30.9
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 1.0e-10 72.0 139 30.9
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 1.0e-10 72.0 139 30.9
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 1.0e-10 72.0 110 34.5
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 1.0e-10 72.0 133 29.3
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 1.3e-10 71.6 128 32.8
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 1.7e-10 71.2 129 30.2
RcHm_v2.0_Chr6g0276221 Rosa chinensis HOM05D007656 ORTHO05D029394 1.7e-10 71.2 97 40.2
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 2.3e-10 70.9 122 31.1
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 2.9e-10 70.5 151 31.1
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 3.9e-10 70.1 172 25.6
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 5.0e-10 69.7 139 30.2
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 5.0e-10 69.7 120 32.5
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 5.0e-10 69.7 119 37.0
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 6.6e-10 69.3 130 31.5
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 1.5e-09 68.2 122 29.5
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 1.5e-09 68.2 128 31.2
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.9e-09 67.8 211 27.5
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 5.6e-09 66.2 129 30.2
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 5.6e-09 66.2 124 33.9
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 4.7e-08 63.2 93 35.5
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 4.7e-08 63.2 132 30.3
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 4.7e-08 63.2 189 28.0
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-07 61.6 117 35.9
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 2.3e-07 60.8 132 28.8
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.4e-06 57.0 119 32.8
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 3.4e-06 57.0 52 53.8
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 4.4e-06 56.6 81 39.5
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.8e-06 56.2 123 29.3


User provided reference genes

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