Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 1.5e-276 955.7 521 100.0
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 3.4e-164 582.4 513 66.1
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 1.6e-137 493.8 464 67.9
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.8e-136 488.4 424 69.1
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.3e-134 481.9 466 65.5
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 5.3e-133 478.8 466 64.8
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 7.8e-108 395.2 509 52.5
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 8.6e-107 391.7 532 46.4
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 1.3e-99 367.9 525 49.1
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 8.1e-97 358.6 559 44.0
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 9.2e-93 345.1 509 43.2
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.3e-91 341.3 518 44.2
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 8.6e-91 338.6 527 42.7
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 5.6e-90 335.9 510 42.5
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.8e-86 323.2 522 41.4
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.9e-85 320.9 524 42.2
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 3.5e-84 316.6 514 42.4
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 1.7e-83 314.3 525 41.5
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 3.3e-82 310.1 518 42.3
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 3.3e-82 310.1 541 40.3
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.8e-81 307.0 521 41.3
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 4.8e-81 306.2 520 42.3
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 4.8e-81 306.2 544 39.2
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 8.1e-81 305.4 514 41.1
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 4.0e-80 303.1 518 41.7
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 9.0e-80 302.0 498 42.4
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.9e-77 294.3 522 42.1
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 7.1e-77 292.4 460 44.1
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 6.0e-76 289.3 421 46.1
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.3e-75 288.1 283 58.7
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.3e-75 287.3 555 36.6
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 6.6e-75 285.8 555 36.4
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.5e-74 284.6 572 38.3
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.5e-74 284.6 517 41.2
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 5.6e-74 282.7 535 38.5
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.3e-73 281.6 574 39.0
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 2.0e-71 274.2 533 37.5
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 5.8e-71 272.7 505 41.6
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 1.1e-69 268.5 546 37.7
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.4e-69 268.1 622 34.7
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 2.4e-69 267.3 589 34.8
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 2.4e-69 267.3 574 36.1
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.6e-68 264.6 509 37.9
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.7e-68 263.8 529 38.8
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.0e-67 261.9 579 38.5
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 1.1e-66 258.5 548 37.8
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 4.3e-66 256.5 515 36.5
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 1.3e-65 255.0 516 38.8
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.3e-65 255.0 523 38.4
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 2.1e-65 254.2 519 36.8
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 2.4e-64 250.8 544 37.5
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 5.3e-64 249.6 508 38.0
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.2e-63 248.4 519 37.0
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 2.0e-63 247.7 363 45.7
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 4.5e-63 246.5 415 38.8
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 4.5e-63 246.5 515 38.6
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.3e-62 245.0 511 36.4
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.2e-62 244.2 534 36.1
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 3.8e-62 243.4 349 43.6
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 3.8e-62 243.4 516 38.6
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.4e-61 241.5 520 36.3
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 5.5e-61 239.6 580 35.3
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 7.1e-61 239.2 515 36.1
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 3.5e-60 236.9 590 35.1
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 4.6e-60 236.5 521 36.7
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 1.0e-59 235.3 519 35.5
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 1.5e-58 231.5 594 34.5
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 3.3e-58 230.3 516 36.0
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 7.4e-58 229.2 524 34.9
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 9.6e-58 228.8 522 35.1
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 2.8e-57 227.3 416 38.5
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 3.7e-57 226.9 500 37.6
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 6.2e-57 226.1 521 33.8
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.2e-55 221.9 395 37.7
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.5e-55 221.5 492 36.6
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 2.0e-55 221.1 511 34.1
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.2e-54 217.6 482 34.9
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.9e-54 217.2 620 32.4
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 3.8e-54 216.9 456 35.3
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 5.0e-54 216.5 514 35.0
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 6.5e-54 216.1 518 36.5
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 3.9e-51 206.8 404 35.4
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 3.9e-51 206.8 366 38.0
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 1.5e-50 204.9 508 34.1
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 5.7e-50 203.0 401 33.7
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 7.4e-50 202.6 431 36.9
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.8e-48 198.0 563 32.5
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 9.0e-48 195.7 536 33.0
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 2.0e-47 194.5 606 31.0
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.4e-45 188.3 524 33.0
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 1.4e-45 188.3 394 35.8
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 3.2e-45 187.2 513 33.3
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 2.3e-43 181.0 463 34.3
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 6.7e-43 179.5 551 29.4
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.5e-42 178.3 586 29.7
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.5e-42 178.3 501 32.1
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.5e-42 178.3 681 30.2
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 3.3e-42 177.2 492 31.3
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 3.4e-39 167.2 529 30.6
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 5.9e-39 166.4 538 31.0
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 7.7e-39 166.0 622 29.9
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.7e-38 164.9 623 29.7
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.7e-38 164.9 623 29.7
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 6.1e-36 156.4 624 28.8
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 7.4e-34 149.4 363 31.4
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 9.1e-32 142.5 680 26.8
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 1.6e-28 131.7 526 29.8
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.3e-27 127.9 415 31.6
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.7e-25 121.7 434 28.3
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 7.0e-24 116.3 521 28.8
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 9.4e-21 105.9 525 25.7
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 4.7e-20 103.6 230 36.5
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 3.7e-17 94.0 558 26.0
FvH4_6g06532 Fragaria vesca HOM05D012998 ORTHO05D025560 1.8e-16 91.7 111 50.5
FvH4_5g03070 Fragaria vesca HOM05D012998 ORTHO05D007556 2.4e-16 91.3 111 50.5
FAN07G1843 Fragaria x ananassa HOM05D012998 ORTHO05D025560 7.0e-16 89.7 111 49.5
FAN13G1116 Fragaria x ananassa HOM05D012998 ORTHO05D025560 2.0e-15 88.2 111 48.6
FAN02G3419 Fragaria x ananassa HOM05D012998 ORTHO05D025560 5.9e-15 86.7 111 48.6
FAN04G2282 Fragaria x ananassa HOM05D012998 ORTHO05D025560 7.2e-13 79.7 111 46.8
FAN22G0421 Fragaria x ananassa HOM05D012998 ORTHO05D007556 6.1e-12 76.6 107 45.8
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.1e-08 65.9 68 51.5
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 9.2e-08 62.8 49 57.1
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.3e-06 58.2 147 32.0
FAN18G1394 Fragaria x ananassa HOM05D012998 ORTHO05D007556 3.8e-06 57.4 98 41.8
FvH4_1g28411 Fragaria vesca HOM05D012998 ORTHO05D000014 8.6e-06 56.2 93 40.9


User provided reference genes

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