Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 9.3e-83 310.1 148 100.0
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 3.2e-75 285.0 149 89.9
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 2.0e-72 275.8 150 88.0
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 1.5e-69 266.2 149 83.2
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 5.9e-69 264.2 150 84.7
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 7.7e-69 263.8 148 83.1
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 2.2e-68 262.3 151 82.1
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 1.1e-67 260.0 150 82.7
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.1e-67 260.0 148 81.8
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 3.2e-67 258.5 148 81.8
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 3.2e-67 258.5 148 81.1
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 4.2e-67 258.1 148 81.1
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 1.0e-65 253.4 148 80.4
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 1.8e-65 252.7 143 83.9
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 1.8e-65 252.7 148 78.4
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 2.3e-65 252.3 148 80.4
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 3.0e-65 251.9 148 78.4
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 3.9e-65 251.5 148 82.4
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 3.9e-65 251.5 138 83.3
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 5.2e-65 251.1 150 78.0
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 6.7e-65 250.8 148 79.7
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 2.0e-64 249.2 143 80.4
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 4.4e-64 248.1 144 81.9
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 5.7e-64 247.7 144 78.5
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 5.7e-64 247.7 146 77.4
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 7.4e-64 247.3 139 79.9
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 7.4e-64 247.3 143 80.4
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 9.7e-64 246.9 145 79.3
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 9.7e-64 246.9 142 80.3
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 1.3e-63 246.5 148 79.1
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 1.7e-63 246.1 144 79.9
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 2.8e-63 245.4 143 79.7
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 2.8e-63 245.4 144 78.5
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 3.7e-63 245.0 143 79.7
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 3.7e-63 245.0 144 79.2
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 8.2e-63 243.8 154 75.3
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 8.2e-63 243.8 147 78.9
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 1.1e-62 243.4 144 78.5
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 1.4e-62 243.0 146 75.3
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 1.4e-62 243.0 146 75.3
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 2.4e-62 242.3 146 74.0
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 2.4e-62 242.3 148 77.0
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 3.1e-62 241.9 148 77.7
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 4.1e-62 241.5 139 82.0
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 4.1e-62 241.5 146 76.0
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 9.1e-62 240.4 146 73.3
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 9.1e-62 240.4 142 78.9
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 9.1e-62 240.4 136 81.6
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 1.2e-61 240.0 150 74.0
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 1.2e-61 240.0 130 82.3
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 2.0e-61 239.2 146 74.0
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 2.6e-61 238.8 148 77.0
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.9e-61 237.7 149 74.5
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.9e-61 237.7 144 76.4
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.0e-60 236.9 123 86.2
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 1.0e-60 236.9 134 81.3
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.7e-60 236.1 150 76.7
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.7e-60 236.1 148 76.4
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.7e-60 236.1 133 78.2
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.9e-60 235.3 149 73.2
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 3.8e-60 235.0 145 76.6
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 6.5e-60 234.2 146 71.9
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 6.5e-60 234.2 135 80.7
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 1.1e-59 233.4 144 75.7
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 1.1e-59 233.4 131 80.2
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 1.5e-59 233.0 148 75.0
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 2.5e-59 232.3 143 75.5
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.5e-59 232.3 128 82.8
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 1.2e-58 229.9 142 73.2
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 1.2e-58 229.9 144 70.1
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.6e-58 229.6 144 70.1
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.6e-58 228.4 142 71.8
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 4.7e-58 228.0 185 62.2
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 1.0e-57 226.9 147 70.7
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 1.8e-57 226.1 130 79.2
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 2.3e-57 225.7 149 71.8
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 5.2e-57 224.6 130 79.2
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 1.5e-56 223.0 147 72.8
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 4.4e-56 221.5 126 79.4
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 7.5e-56 220.7 146 70.5
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 2.2e-55 219.2 134 75.4
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 3.7e-55 218.4 146 67.1
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 4.8e-55 218.0 136 73.5
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 4.8e-55 218.0 136 73.5
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.3e-55 217.6 167 65.3
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 8.2e-55 217.2 137 71.5
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 8.2e-55 217.2 146 67.1
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 1.1e-54 216.9 140 70.7
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 1.1e-54 216.9 146 67.1
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.8e-54 216.1 146 66.4
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 2.4e-54 215.7 137 72.3
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 5.3e-54 214.5 146 66.4
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 5.3e-54 214.5 128 76.6
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 5.3e-54 214.5 128 74.2
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 9.1e-54 213.8 137 70.8
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 9.1e-54 213.8 133 72.2
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 2.0e-53 212.6 133 71.4
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 2.7e-53 212.2 203 54.7
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 3.5e-53 211.8 137 70.1
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 4.5e-53 211.5 137 69.3
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 7.7e-53 210.7 133 72.2
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 1.7e-52 209.5 140 67.9
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 4.2e-51 204.9 128 68.8
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 4.2e-51 204.9 117 79.5
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 7.2e-51 204.1 135 68.9
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 1.6e-50 203.0 175 58.9
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 2.7e-50 202.2 113 82.3
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 8.0e-50 200.7 138 65.9
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 6.8e-49 197.6 136 66.2
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 7.7e-45 184.1 118 72.0
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 2.5e-43 179.1 94 85.1
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 3.3e-43 178.7 101 82.2
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 6.1e-42 174.5 93 83.9
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.0e-41 173.7 96 82.3
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 2.4e-38 162.5 96 80.2
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.2e-37 160.2 97 75.3
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 8.9e-33 144.1 103 67.0
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 1.1e-22 110.5 110 55.5
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 7.3e-19 97.8 68 70.6
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 3.6e-18 95.5 53 79.2
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.5e-16 90.1 43 86.0
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 2.7e-13 79.3 57 73.7
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 3.3e-11 72.4 53 62.3
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.7e-10 68.6 35 94.3
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.4e-06 57.0 52 55.8


User provided reference genes

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