Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 2.1e-106 389.0 194 100.0
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 5.4e-46 188.3 214 52.3
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 7.0e-46 188.0 212 53.8
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 7.0e-46 188.0 205 56.1
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.0e-41 174.1 207 53.6
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.8e-41 171.4 207 52.7
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.8e-41 171.4 207 52.7
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.8e-41 171.4 207 53.1
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 8.9e-41 171.0 212 51.9
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.9e-35 153.3 216 44.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.2e-34 150.6 216 44.9
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.1e-34 149.8 216 44.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 3.1e-33 146.0 222 45.5
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 6.8e-33 144.8 222 45.5
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 8.9e-33 144.4 205 46.3
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.9e-33 144.4 214 43.9
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.0e-32 143.3 210 44.3
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.0e-32 143.3 228 42.1
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 9.8e-32 141.0 216 43.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 9.8e-32 141.0 207 45.9
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.7e-31 140.2 214 43.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.7e-31 140.2 200 47.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 2.2e-31 139.8 207 42.5
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.9e-31 139.4 202 44.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.4e-31 138.3 219 43.8
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 6.4e-31 138.3 219 43.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 8.3e-31 137.9 210 41.9
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.4e-30 136.3 205 45.4
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 5.4e-30 135.2 217 44.2
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 9.2e-30 134.4 219 42.9
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.2e-30 134.4 215 45.6
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.2e-29 134.0 218 39.4
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.6e-29 133.7 205 45.9
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.6e-29 133.7 204 45.1
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.1e-29 133.3 217 43.3
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.7e-29 132.9 207 41.1
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.7e-29 132.9 209 41.1
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 3.5e-29 132.5 207 42.5
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.6e-29 132.1 210 44.8
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 6.0e-29 131.7 209 40.7
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 6.0e-29 131.7 207 43.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.0e-28 131.0 212 42.0
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 1.3e-28 130.6 208 41.8
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.7e-28 130.2 210 43.3
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.3e-28 129.8 229 40.6
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.0e-28 129.4 210 43.3
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.9e-28 129.0 211 40.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 5.1e-28 128.6 217 41.5
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 6.6e-28 128.3 210 42.4
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.1e-27 127.5 210 41.9
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.5e-27 127.1 210 41.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.9e-27 126.7 211 39.3
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.6e-27 125.2 230 40.0
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.6e-27 125.2 211 41.2
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 7.3e-27 124.8 212 42.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 9.5e-27 124.4 206 41.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 2.8e-26 122.9 210 41.0
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.7e-26 122.1 186 44.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.1e-25 120.9 207 41.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.1e-25 119.4 206 39.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.9e-25 117.9 209 38.3
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.2e-24 117.5 194 38.1
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.2e-24 117.5 213 39.9
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.5e-24 117.1 206 40.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.0e-24 116.7 227 36.1
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.0e-24 116.7 227 36.1
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 2.0e-24 116.7 213 39.0
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 2.0e-24 116.7 213 39.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.6e-24 116.3 213 38.5
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.4e-24 115.9 211 39.3
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 9.9e-24 114.4 211 37.0
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 9.9e-24 114.4 208 36.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 9.9e-24 114.4 221 38.9
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.3e-23 114.0 229 36.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.3e-23 114.0 214 36.9
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.7e-23 113.6 208 38.5
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.7e-23 113.6 208 37.0
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.4e-23 111.7 209 37.3
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.4e-23 111.7 105 58.1
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.4e-23 111.7 211 37.4
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 8.4e-23 111.3 206 37.9
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.1e-22 110.9 206 37.4
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.1e-22 110.9 206 37.4
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.4e-22 110.5 211 38.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.4e-22 110.5 206 37.4
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.4e-22 110.5 162 45.1
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.4e-22 110.5 212 37.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.9e-22 110.2 167 38.9
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 3.2e-22 109.4 184 40.8
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.2e-22 109.4 225 37.3
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 3.2e-22 109.4 208 37.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 7.1e-22 108.2 205 37.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 9.2e-22 107.8 207 37.2
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 9.2e-22 107.8 206 37.9
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.6e-21 107.1 207 38.2
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.1e-21 106.7 216 38.4
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 2.7e-21 106.3 196 35.7
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 6.0e-21 105.1 206 37.9
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 6.0e-21 105.1 210 36.7
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 6.0e-21 105.1 232 34.9
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.3e-20 104.0 204 35.8
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 5.1e-20 102.1 214 36.4
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 6.6e-20 101.7 197 35.5
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 8.6e-20 101.3 204 34.8
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.9e-19 100.1 206 35.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 5.6e-19 98.6 199 36.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 7.3e-19 98.2 199 36.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.6e-18 97.1 212 34.0
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 2.1e-18 96.7 69 65.2
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.1e-18 96.7 207 35.3
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.8e-18 96.3 202 37.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 3.6e-18 95.9 99 50.5
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 8.1e-18 94.7 104 52.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.1e-17 94.4 225 32.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.4e-17 94.0 207 33.8
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.4e-17 93.2 179 38.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 5.2e-17 92.0 188 36.2
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.9e-17 91.7 208 36.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 8.9e-17 91.3 213 33.8
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.2e-16 90.9 76 55.3
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.2e-16 90.9 76 55.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.0e-16 90.1 200 35.0
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.0e-16 90.1 184 35.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 2.0e-16 90.1 114 43.0
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 7.6e-16 88.2 111 42.3
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.9e-14 83.6 108 40.7
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.5e-13 79.3 184 32.1
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 4.6e-13 79.0 93 45.2
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 7.8e-13 78.2 206 31.1
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.7e-12 77.0 99 41.4
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.3e-12 76.6 170 36.5
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.3e-12 76.6 203 34.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 6.6e-12 75.1 199 31.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.1e-11 74.3 235 29.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-11 74.3 139 33.8
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 7.3e-11 71.6 203 28.1
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 6.2e-10 68.6 225 32.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.9e-09 65.1 194 30.4
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 9.0e-09 64.7 208 29.8
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.2e-08 64.3 140 31.4
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.5e-08 63.9 143 33.6
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 3.8e-07 59.3 93 37.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 8.4e-07 58.2 227 26.0
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.2e-06 55.8 154 35.1
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 5.4e-06 55.5 76 39.5
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.4e-06 55.5 101 31.7


User provided reference genes

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