Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G201400 Prunus persica HOM05D000247 ORTHO05D000288 5.2e-37 157.1 76 100.0
Nn1g03710 Nelumbo nucifera HOM05D000247 ORTHO05D000288 1.0e-16 89.7 69 59.4
Ciclev10009896m.g Citrus clementina HOM05D000247 ORTHO05D000288 2.5e-15 85.1 111 44.1
Thecc.07G055000 Theobroma cacao HOM05D000247 ORTHO05D000288 2.5e-15 85.1 108 45.4
Dinv03941 Davidia involucrata HOM05D000247 ORTHO05D000288 1.2e-14 82.8 109 43.1
Duzib213G0045 Durio zibethinus HOM05D000247 ORTHO05D000288 2.8e-14 81.6 111 43.2
Dinv17847 Davidia involucrata HOM05D000247 ORTHO05D000288 3.6e-14 81.3 111 41.4
Atru.chr2.3183 Acer truncatum HOM05D000247 ORTHO05D000288 6.2e-14 80.5 65 60.0
Dinv18939 Davidia involucrata HOM05D000247 ORTHO05D000288 8.1e-14 80.1 111 41.4
Dinv22313 Davidia involucrata HOM05D000247 ORTHO05D000288 8.1e-14 80.1 114 42.1
Haze_06688 Corylus avellana HOM05D000141 ORTHO05D001968 1.4e-13 79.3 113 39.8
Manes.03G122050 Manihot esculenta HOM05D000247 ORTHO05D000288 1.8e-13 79.0 108 39.8
Manes.15G077200 Manihot esculenta HOM05D000247 ORTHO05D000288 1.8e-13 79.0 108 39.8
TAR624G0987 Trochodendron aralioides HOM05D000247 ORTHO05D000288 1.8e-13 79.0 108 43.5
ClCG03G005110 Citrullus lanatus HOM05D000247 ORTHO05D000288 2.4e-13 78.6 69 53.6
Thecc.06G208700 Theobroma cacao HOM05D000247 ORTHO05D000288 2.4e-13 78.6 110 40.0
COL.COLO4_09557 Corchorus olitorius HOM05D000247 ORTHO05D000288 3.1e-13 78.2 115 40.0
GSVIVG01014587001 Vitis vinifera HOM05D000247 ORTHO05D000288 3.1e-13 78.2 107 42.1
Cfa016411 Carpinus fangiana HOM05D000247 ORTHO05D000288 4.0e-13 77.8 112 39.3
Oeu013858.2 Olea europaea HOM05D000141 ORTHO05D001968 5.2e-13 77.4 110 40.9
Potri.004G031700 Populus trichocarpa HOM05D000247 ORTHO05D000288 6.8e-13 77.0 113 38.1
Oeu013857.1 Olea europaea HOM05D000247 ORTHO05D000288 8.9e-13 76.6 107 42.1
vmacro11771 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 8.9e-13 76.6 108 40.7
Gohir.A01G073900 Gossypium hirsutum HOM05D000247 ORTHO05D000288 1.2e-12 76.3 110 40.9
Duzib170G0151 Durio zibethinus HOM05D000247 ORTHO05D000288 1.5e-12 75.9 110 40.0
Thhalv10009112m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 1.5e-12 75.9 114 37.7
GSVIVG01007337001 Vitis vinifera HOM05D000247 ORTHO05D000288 1.5e-12 75.9 105 40.0
CiPaw.09G080500 Carya illinoinensis HOM05D000247 ORTHO05D000288 2.0e-12 75.5 115 37.4
Gorai.002G081800 Gossypium raimondii HOM05D000247 ORTHO05D000288 2.0e-12 75.5 110 40.9
Gorai.009G175900 Gossypium raimondii HOM05D000247 ORTHO05D000288 2.6e-12 75.1 108 39.8
COL.COLO4_31688 Corchorus olitorius HOM05D000247 ORTHO05D000288 3.4e-12 74.7 108 39.8
Gohir.D05G170700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 3.4e-12 74.7 108 38.9
Duzib192G0716 Durio zibethinus HOM05D000247 ORTHO05D000288 5.8e-12 73.9 110 39.1
Gohir.A05G167700 Gossypium hirsutum HOM05D000247 ORTHO05D000288 5.8e-12 73.9 106 39.6
PSO832G0793 Papaver somniferum HOM05D000247 ORTHO05D000288 5.8e-12 73.9 115 39.1
Sabra04G0018000 Salix brachista HOM05D000247 ORTHO05D000288 5.8e-12 73.9 113 37.2
Ciclev10017174m.g Citrus clementina HOM05D000247 ORTHO05D000288 7.6e-12 73.6 115 37.4
TWI38G1486 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 7.6e-12 73.6 114 36.8
Aqoxy1G03798 Aquilegia oxysepala HOM05D000247 ORTHO05D000288 9.9e-12 73.2 108 37.0
Gohir.D01G060400 Gossypium hirsutum HOM05D000247 ORTHO05D000288 9.9e-12 73.2 110 40.0
Potri.001G416500 Populus trichocarpa HOM05D000247 ORTHO05D000288 9.9e-12 73.2 108 37.0
MELO3C018122.2 Cucumis melo HOM05D000247 ORTHO05D000288 1.3e-11 72.8 111 35.1
Manes.16G017200 Manihot esculenta HOM05D000247 ORTHO05D000288 1.7e-11 72.4 110 37.3
PSO210G3616 Papaver somniferum HOM05D000247 ORTHO05D000288 1.7e-11 72.4 115 38.3
Cpa.g.sc81.10 Carica papaya HOM05D000247 ORTHO05D000288 2.2e-11 72.0 108 39.8
Hma1.2p1_1682F.1_g297340 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 2.2e-11 72.0 111 36.9
Prupe.4G029100 Prunus persica HOM05D000247 ORTHO05D000288 2.2e-11 72.0 106 37.7
QL05p077133 Quercus lobata HOM05D000247 ORTHO05D000288 2.2e-11 72.0 108 38.9
QL93p0073_1220 Quercus lobata HOM05D000247 ORTHO05D000288 2.2e-11 72.0 108 38.9
Peaxi162Scf00082g01211 Petunia axillaris HOM05D000247 ORTHO05D000288 2.9e-11 71.6 115 35.7
Rhsim02G0114900 Rhododendron simsii HOM05D000247 ORTHO05D000288 2.9e-11 71.6 111 37.8
Solyc02g079960.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 2.9e-11 71.6 110 38.2
Sopen02g024710 Solanum pennellii HOM05D000247 ORTHO05D000288 3.8e-11 71.2 105 39.0
CAN.G569.62 Capsicum annuum HOM05D000247 ORTHO05D000288 4.9e-11 70.9 111 38.7
CiPaw.10G066700 Carya illinoinensis HOM05D000247 ORTHO05D000288 4.9e-11 70.9 115 35.7
PGSC0003DMG400021716 Solanum tuberosum HOM05D000247 ORTHO05D000288 4.9e-11 70.9 110 38.2
MD05G1336400 Malus domestica HOM05D000247 ORTHO05D000288 6.4e-11 70.5 114 30.7
PGR004G1780 Punica granatum HOM05D000247 ORTHO05D000288 8.4e-11 70.1 110 34.5
Actinidia05128 Actinidia chinensis HOM05D000247 ORTHO05D000288 1.1e-10 69.7 115 37.4
Actinidia11833 Actinidia chinensis HOM05D000247 ORTHO05D000288 1.1e-10 69.7 114 34.2
THA.LOC104809517 Tarenaya hassleriana HOM05D000247 ORTHO05D000288 1.1e-10 69.7 112 37.5
CSS0035900 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 1.4e-10 69.3 114 34.2
CSS0044574 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 1.4e-10 69.3 114 34.2
Sed0010392 Sechium edule HOM05D000247 ORTHO05D000288 1.4e-10 69.3 115 34.8
BcaC07g41775 Brassica carinata HOM05D000247 ORTHO05D000288 1.9e-10 68.9 111 35.1
BolC8t52349H Brassica oleracea HOM05D000247 ORTHO05D000288 1.9e-10 68.9 111 35.1
Atru.chr10.2109 Acer truncatum HOM05D001139 ORTHO05D000936 2.4e-10 68.6 69 49.3
Nitab4.5_0009680g0020 Nicotiana tabacum HOM05D000247 ORTHO05D000288 2.4e-10 68.6 115 35.7
MSTRG.12952 Avicennia marina HOM05D000247 ORTHO05D000288 3.2e-10 68.2 107 38.3
Sp1g10150 Schrenkiella parvula HOM05D000247 ORTHO05D000288 3.2e-10 68.2 111 35.1
BcaB08g37399 Brassica carinata HOM05D000247 ORTHO05D000288 4.1e-10 67.8 111 34.2
BcaC07g41779 Brassica carinata HOM05D000247 ORTHO05D000288 4.1e-10 67.8 111 34.2
BraA09t41790Z Brassica rapa HOM05D000247 ORTHO05D000288 4.1e-10 67.8 111 34.2
RcHm_v2.0_Chr5g0004481 Rosa chinensis HOM05D000247 ORTHO05D000288 4.1e-10 67.8 111 35.1
MBI18_g26663_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D000288 5.4e-10 67.4 121 36.4
Nn1g06961 Nelumbo nucifera HOM05D000247 ORTHO05D000288 5.4e-10 67.4 110 35.5
C08p48160 Brassica napus HOM05D000247 ORTHO05D000288 7.1e-10 67.0 111 34.2
CARHR011800 Cardamine hirsuta HOM05D000247 ORTHO05D000288 7.1e-10 67.0 104 34.6
vmacro15839 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 7.1e-10 67.0 111 36.0
ClCG05G014810 Citrullus lanatus HOM05D000247 ORTHO05D000288 9.2e-10 66.6 108 35.2
Carub.0001s1114 Capsella rubella HOM05D000247 ORTHO05D000288 1.6e-09 65.9 102 36.3
Nitab4.5_0002345g0090 Nicotiana tabacum HOM05D000247 ORTHO05D000288 1.6e-09 65.9 115 34.8
Peaxi162Scf00678g00047 Petunia axillaris HOM05D000247 ORTHO05D000288 1.6e-09 65.9 109 35.8
Aa31LG1G3230 Aethionema arabicum HOM05D000247 ORTHO05D000288 2.1e-09 65.5 107 33.6
Eucgr.D00853 Eucalyptus grandis HOM05D000247 ORTHO05D000288 2.1e-09 65.5 108 37.0
Phvul.006G196500 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 2.1e-09 65.5 105 35.2
AT1G11530 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 3.5e-09 64.7 102 35.3
Glyma.06G266700 Glycine max HOM05D000247 ORTHO05D000288 3.5e-09 64.7 110 33.6
VMungo0540G0926 Vigna mungo HOM05D000247 ORTHO05D000288 3.5e-09 64.7 108 34.3
ATR0762G027 Amborella trichopoda HOM05D000247 ORTHO05D000288 6.0e-09 63.9 113 33.6
AL1G22630 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 6.0e-09 63.9 102 34.3
Lj6g0021886 Lotus japonicus HOM05D000247 ORTHO05D000288 6.0e-09 63.9 105 34.3
Ca_18843_v3 Cicer arietinum L. HOM05D000247 ORTHO05D000288 7.8e-09 63.5 106 35.8
Phvul.011G141400 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 7.8e-09 63.5 110 33.6
DCAR_004175 Daucus carota HOM05D000247 ORTHO05D000288 1.0e-08 63.2 110 37.3
arahy.Tifrunner.gnm1.ann1.I0I8XZ Arachis hypogaea HOM05D000247 ORTHO05D000288 1.3e-08 62.8 111 32.4
MELO3C002508.2 Cucumis melo HOM05D000247 ORTHO05D000288 1.3e-08 62.8 110 35.5
Glyma.13G286600 Glycine max HOM05D000247 ORTHO05D000288 1.3e-08 62.8 113 31.0
Lj3g0009656 Lotus japonicus HOM05D000247 ORTHO05D000288 1.3e-08 62.8 110 33.6
PGR004G0688 Punica granatum HOM05D000247 ORTHO05D000288 1.3e-08 62.8 110 34.5
Glyma.12G136400 Glycine max HOM05D000247 ORTHO05D000288 2.3e-08 62.0 110 33.6
Glyma.12G215000 Glycine max HOM05D000247 ORTHO05D000288 2.3e-08 62.0 113 30.1
Lalb_Chr22g0357091 Lupinus albus HOM05D000247 ORTHO05D000288 2.3e-08 62.0 111 33.3
Lalb_Chr01g0006131 Lupinus albus HOM05D000247 ORTHO05D000288 3.9e-08 61.2 111 32.4
SGA_v2.0_scaffold9G05024 Striga asiatica HOM05D000247 ORTHO05D000288 3.9e-08 61.2 106 34.9
Cc02_g11760 Coffea canephora HOM05D000247 ORTHO05D000288 5.1e-08 60.8 111 34.2
MD10G1311900 Malus domestica HOM05D000247 ORTHO05D000288 5.1e-08 60.8 114 29.8
Atru.chr2.3193 Acer truncatum HOM05D000247 ORTHO05D000288 6.6e-08 60.5 106 36.8
arahy.Tifrunner.gnm1.ann1.7ZYB2E Arachis hypogaea HOM05D000247 ORTHO05D000288 6.6e-08 60.5 107 32.7
Cpa.g.sc97.79 Carica papaya HOM05D000247 ORTHO05D000288 6.6e-08 60.5 101 38.6
Os04g0629500 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D000288 6.6e-08 60.5 115 29.6
HPP92_005902 Vanilla planifolia HOM05D000247 ORTHO05D000288 6.6e-08 60.5 114 30.7
Migut.H01863 Erythranthe guttata HOM05D000247 ORTHO05D000288 8.7e-08 60.1 103 35.9
Psat5g249480 Pisum sativum HOM05D000247 ORTHO05D000288 8.7e-08 60.1 111 30.6
Psat7g122160 Pisum sativum HOM05D000247 ORTHO05D000288 1.1e-07 59.7 110 32.7
Medtr2g010750 Medicago truncatula HOM05D000247 ORTHO05D000288 1.5e-07 59.3 106 33.0
Lalb_Chr18g0060121 Lupinus albus HOM05D000247 ORTHO05D000288 1.9e-07 58.9 111 34.2
Medtr4g081380 Medicago truncatula HOM05D000247 ORTHO05D000288 1.9e-07 58.9 110 32.7
CsaV3_1G011310 Cucumis sativus L. HOM05D000247 ORTHO05D000288 2.5e-07 58.5 110 34.5
FvH4_3g02911 Fragaria vesca HOM05D000247 ORTHO05D000288 2.5e-07 58.5 111 33.3
Glyma.15G063100 Glycine max HOM05D000247 ORTHO05D000288 2.5e-07 58.5 104 32.7
CANSAT56G0019 Cannabis sativa HOM05D000247 ORTHO05D000288 3.3e-07 58.2 105 33.3
Zm00001eb431490 Zea mays HOM05D000247 ORTHO05D000288 7.3e-07 57.0 115 32.2
Sed0000067 Sechium edule HOM05D000247 ORTHO05D000288 1.2e-06 56.2 110 32.7
EL10Ac8g19917 Beta vulgaris HOM05D000247 ORTHO05D000288 1.6e-06 55.8 114 30.7
Lj3g0003664 Lotus japonicus HOM05D000247 ORTHO05D000288 2.1e-06 55.5 112 28.6
Medtr2g082590 Medicago truncatula HOM05D000247 ORTHO05D000288 2.1e-06 55.5 121 28.9
TPR.G32664 Trifolium pratense HOM05D000247 ORTHO05D000288 2.1e-06 55.5 115 31.3
Sc17g0006940 Simmondsia chinensis HOM05D000247 ORTHO05D000288 2.8e-06 55.1 37 67.6
CDE01G0748 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 3.6e-06 54.7 109 28.4
HanXRQChr05g0130751 Helianthus annuus HOM05D000247 ORTHO05D000288 4.7e-06 54.3 116 31.0
VMungo1080G1163 Vigna mungo HOM05D000247 ORTHO05D000288 8.1e-06 53.5 37 62.2


User provided reference genes

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