Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 4.6e-121 438.0 229 100.0
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 3.6e-118 428.3 229 97.8
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 3.8e-107 391.7 228 89.9
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.4e-106 389.8 229 89.5
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 9.3e-106 387.1 230 88.3
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 3.3e-103 378.6 249 81.9
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 5.6e-103 377.9 230 86.1
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 6.2e-102 374.4 230 85.2
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.4e-101 373.2 230 85.2
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.4e-101 372.5 229 83.8
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.0e-101 371.7 230 82.6
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.0e-99 367.1 230 80.4
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.7e-99 366.3 230 83.0
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 2.2e-99 365.9 230 82.2
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 3.8e-99 365.2 230 82.6
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 6.5e-99 364.4 230 80.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.5e-99 364.4 230 81.7
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 8.4e-99 364.0 230 80.9
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 8.4e-99 364.0 230 81.3
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.5e-98 362.5 230 81.7
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 3.2e-98 362.1 230 82.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 9.3e-98 360.5 230 80.9
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 2.1e-97 359.4 230 80.0
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.5e-97 358.6 230 80.9
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.8e-96 356.3 230 79.6
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.3e-96 355.9 230 79.6
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.3e-96 355.9 229 78.6
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.1e-95 353.6 230 77.4
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.5e-95 353.2 230 78.7
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 1.9e-95 352.8 230 78.3
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.9e-95 352.8 230 80.0
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.5e-95 352.4 252 75.4
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 5.7e-95 351.3 229 77.7
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.4e-95 350.9 230 78.3
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.3e-94 350.1 229 77.7
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 8.2e-94 347.4 230 78.3
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.4e-93 346.7 230 77.8
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.4e-93 345.9 230 77.4
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 5.3e-93 344.7 230 77.8
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 9.0e-93 344.0 230 77.4
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.5e-92 343.2 230 76.1
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 1.5e-92 343.2 230 76.1
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 3.4e-92 342.0 230 75.7
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 1.0e-91 340.5 238 72.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.3e-91 340.1 229 74.2
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 77.0
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 2.2e-91 339.3 220 80.5
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 2.9e-91 339.0 230 76.5
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 1.9e-90 336.3 230 74.3
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 9.4e-90 334.0 230 73.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.2e-89 333.6 230 74.8
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 2.1e-89 332.8 230 74.8
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.0e-88 330.5 230 74.3
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.0e-88 330.5 229 75.1
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.3e-88 329.3 232 75.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 73.9
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 3.9e-88 328.6 230 73.9
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 5.1e-88 328.2 230 74.8
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 5.1e-88 328.2 232 74.6
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 8.8e-88 327.4 232 75.0
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.1e-87 327.0 230 73.5
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.1e-87 327.0 230 73.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.5e-87 326.6 230 72.2
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.5e-87 325.9 230 73.9
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 73.0
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 1.3e-86 323.6 232 72.8
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.7e-86 323.2 230 73.9
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.7e-86 323.2 220 75.9
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 70.4
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 6.3e-86 321.2 230 72.2
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 8.2e-86 320.9 307 60.9
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 8.2e-86 320.9 263 65.4
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 2.4e-85 319.3 231 71.4
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 4.1e-85 318.5 231 74.0
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 5.3e-85 318.2 254 67.7
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.4e-84 315.5 230 73.0
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 4.5e-84 315.1 232 73.3
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 2.2e-83 312.8 230 68.7
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.2e-83 312.8 232 72.4
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.8e-83 312.0 231 70.1
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 3.6e-81 305.4 360 51.1
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 6.7e-80 301.2 229 69.4
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.5e-79 300.1 229 65.9
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.0e-79 299.7 229 65.9
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 67.4
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.3e-79 298.9 229 64.6
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 3.3e-79 298.9 229 65.9
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 4.4e-79 298.5 229 65.5
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 5.7e-79 298.1 229 65.1
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 5.7e-79 298.1 229 65.5
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.4e-79 297.7 236 68.2
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.3e-78 297.0 229 68.1
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.2e-78 296.2 229 64.6
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 67.4
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.8e-78 295.0 229 65.5
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.8e-78 295.0 229 65.5
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 8.2e-78 294.3 229 64.6
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.4e-77 293.5 229 65.1
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.4e-77 293.5 229 64.2
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.4e-77 292.7 229 64.6
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.5e-76 290.0 220 68.6
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 5.9e-76 288.1 229 63.8
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 1.3e-75 287.0 229 63.3
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.7e-75 286.6 231 64.9
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.4e-72 276.9 214 67.3
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.9e-72 275.4 230 66.1
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 3.9e-72 275.4 318 52.8
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 3.9e-72 275.4 199 70.9
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.3e-71 272.3 181 77.9
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.6e-65 253.4 166 78.3
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 3.0e-64 249.2 164 77.4
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.7e-62 243.4 164 75.6
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.7e-62 243.4 230 54.8
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.3e-62 241.1 164 77.4
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.1e-61 238.8 179 70.4
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.2e-59 233.0 140 83.6
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.5e-58 228.4 149 79.2
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 5.2e-56 221.9 231 52.8
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 8.8e-56 221.1 228 57.0
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.5e-55 220.3 229 52.4
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 2.0e-55 219.9 141 78.0
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 3.4e-55 219.2 282 47.5
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.6e-49 200.3 138 72.5
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.1e-49 199.9 117 87.2
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.1e-49 198.4 233 47.6
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 7.8e-44 181.4 245 46.5
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 2.9e-43 179.5 241 46.1
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 2.9e-43 179.5 111 80.2
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 3.3e-42 176.0 175 53.7
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.3e-42 174.9 118 76.3
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 8.0e-41 171.4 139 64.0
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 2.3e-40 169.9 138 62.3
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 4.0e-40 169.1 266 41.0
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 6.8e-40 168.3 216 48.6
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 2.4e-37 159.8 291 37.8
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.1e-34 151.0 154 51.3
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.6e-33 147.1 123 68.3
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.1e-28 130.2 111 62.2
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.2e-25 120.9 102 63.7
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 2.6e-23 113.2 111 55.9
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 4.1e-21 105.9 69 73.9
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 4.6e-20 102.4 71 66.2
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.3e-19 100.9 105 56.2
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.5e-18 97.4 69 69.6
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 8.9e-16 88.2 77 62.3
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.5e-15 87.4 63 63.5
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.4e-15 85.9 58 70.7
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 7.6e-15 85.1 129 38.8
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.6e-15 85.1 54 83.3
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.3e-14 84.3 65 61.5
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 2.9e-14 83.2 137 39.4
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 8.4e-14 81.6 83 59.0
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.6e-12 77.4 95 46.3
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 1.0e-11 74.7 48 83.3
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 8.7e-11 71.6 69 50.7
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.6e-09 66.2 38 81.6
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.1e-08 64.7 50 60.0
MD03G1213500 Malus domestica HOM05D004531 ORTHO05D246742 5.8e-07 58.9 35 85.7
Gohir.A12G148851 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.6e-07 58.5 62 59.7
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.7e-06 57.4 39 69.2


User provided reference genes

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