Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G197700 Prunus persica HOM05D009454 ORTHO05D009427 5.4e-63 244.2 126 100.0
MD11G1229800 Malus domestica HOM05D023596 ORTHO05D009427 4.3e-36 154.8 130 70.0
MD03G1215100 Malus domestica HOM05D009454 ORTHO05D009427 8.1e-27 124.0 114 64.9
CiPaw.11G180600 Carya illinoinensis HOM05D009454 ORTHO05D009427 9.6e-20 100.5 141 49.6
Sabra16G0281500 Salix brachista HOM05D020515 ORTHO05D009427 1.8e-18 96.3 141 44.0
Ciclev10009866m.g Citrus clementina HOM05D009454 ORTHO05D009427 2.4e-18 95.9 137 46.7
TWI38G2182 Tripterygium wilfordii HOM05D009454 ORTHO05D009427 4.0e-18 95.1 146 47.9
Duzib213G0681 Durio zibethinus HOM05D009454 ORTHO05D009427 5.3e-18 94.7 142 45.1
Haze_09576 Corylus avellana HOM05D009454 ORTHO05D009427 4.9e-16 88.2 140 41.4
TWI38G2011 Tripterygium wilfordii HOM05D010083 ORTHO05D009427 4.9e-16 88.2 145 47.6
TAR629G2024 Trochodendron aralioides HOM05D009454 ORTHO05D009427 2.4e-15 85.9 133 42.9
Potri.011G130400 Populus trichocarpa HOM05D020515 ORTHO05D009427 3.2e-15 85.5 141 40.4
ClCG10G006150 Citrullus lanatus HOM05D023599 ORTHO05D009427 7.1e-15 84.3 146 41.8
Potri.001G409600 Populus trichocarpa HOM05D020515 ORTHO05D009427 1.6e-14 83.2 141 39.7
THA.LOC104809286 Tarenaya hassleriana HOM05D010083 ORTHO05D009427 2.1e-14 82.8 131 45.8
FvH4_3g21550 Fragaria vesca HOM05D023596 ORTHO05D029380 2.7e-14 82.4 118 44.9
FAN11G2805 Fragaria x ananassa HOM05D023596 ORTHO05D029380 2.7e-14 82.4 118 44.9
Manes.15G079100 Manihot esculenta HOM05D020515 ORTHO05D009427 6.0e-14 81.3 144 41.7
FAN25G2266 Fragaria x ananassa HOM05D023596 ORTHO05D029380 2.3e-13 79.3 118 44.1
Gohir.A04G023500 Gossypium hirsutum HOM05D009454 ORTHO05D009427 2.3e-13 79.3 140 42.1
TAR627G0356 Trochodendron aralioides HOM05D009454 ORTHO05D009427 3.9e-13 78.6 136 42.6
Gorai.009G428800 Gossypium raimondii HOM05D009454 ORTHO05D009427 6.6e-13 77.8 140 41.4
Duzib170G0628 Durio zibethinus HOM05D009454 ORTHO05D009427 8.7e-13 77.4 136 40.4
MELO3C016602.2 Cucumis melo HOM05D023599 ORTHO05D009427 1.5e-12 76.6 145 39.3
Dinv18549 Davidia involucrata HOM05D014456 ORTHO05D011476 1.5e-12 76.6 130 37.7
Sed0000886 Sechium edule HOM05D023599 ORTHO05D009427 1.5e-12 76.6 132 39.4
CsaV3_3G005700 Cucumis sativus L. HOM05D023599 ORTHO05D009427 3.3e-12 75.5 147 40.1
Dinv10899 Davidia involucrata HOM05D012535 ORTHO05D011476 3.3e-12 75.5 128 36.7
FAN16G3060 Fragaria x ananassa HOM05D023596 ORTHO05D029380 3.3e-12 75.5 118 43.2
Lalb_Chr19g0134651 Lupinus albus HOM05D012347 ORTHO05D009427 7.4e-12 74.3 147 42.2
PGR031G1751 Punica granatum HOM05D009454 ORTHO05D009427 1.3e-11 73.6 138 42.0
Atru.chr2.3110 Acer truncatum HOM05D010083 ORTHO05D009427 2.8e-11 72.4 131 39.7
Atru.chr2.3135 Acer truncatum HOM05D010083 ORTHO05D009427 2.8e-11 72.4 131 39.7
Actinidia35306 Actinidia chinensis HOM05D009454 ORTHO05D009427 2.8e-11 72.4 131 38.9
TAR624G0118 Trochodendron aralioides HOM05D009454 ORTHO05D009427 2.8e-11 72.4 131 36.6
TAR626G0489 Trochodendron aralioides HOM05D009454 ORTHO05D009427 2.8e-11 72.4 136 39.7
Gohir.D01G059100 Gossypium hirsutum HOM05D009454 ORTHO05D009427 8.1e-11 70.9 136 39.0
Dinv03958 Davidia involucrata HOM05D009454 ORTHO05D009427 1.1e-10 70.5 134 40.3
Gohir.D05G363800 Gossypium hirsutum HOM05D009454 ORTHO05D009427 1.1e-10 70.5 138 38.4
BcaB08g35816 Brassica carinata HOM05D010083 ORTHO05D009427 1.4e-10 70.1 139 38.1
CSS0036879 Camellia sinensis var. sinensis HOM05D014456 ORTHO05D011476 1.8e-10 69.7 132 39.4
Medtr4g081500 Medicago truncatula HOM05D012347 ORTHO05D009427 1.8e-10 69.7 135 43.7
Carub.0008s1485 Capsella rubella HOM05D010083 ORTHO05D009427 3.1e-10 68.9 140 37.1
A10p11850 Brassica napus HOM05D010083 ORTHO05D009427 4.0e-10 68.6 139 38.8
BraA10t43282Z Brassica rapa HOM05D010083 ORTHO05D009427 4.0e-10 68.6 139 38.8
Solyc07g063910.4 Solanum lycopersicum HOM05D017076 ORTHO05D017865 4.0e-10 68.6 130 40.0
Gorai.002G080100 Gossypium raimondii HOM05D009454 ORTHO05D009427 6.9e-10 67.8 136 37.5
C09p44910 Brassica napus HOM05D010083 ORTHO05D009427 9.0e-10 67.4 139 38.1
Phvul.011G145600 Phaseolus vulgaris HOM05D012347 ORTHO05D009427 9.0e-10 67.4 129 38.8
Actinidia39291 Actinidia chinensis HOM05D014456 ORTHO05D011476 1.2e-09 67.0 127 32.3
EL10Ac4g08003 Beta vulgaris HOM05D017899 ORTHO05D009427 1.2e-09 67.0 143 37.1
Glyma.06G263300 Glycine max HOM05D012347 ORTHO05D009427 1.5e-09 66.6 143 41.3
Actinidia10697 Actinidia chinensis HOM05D009454 ORTHO05D009427 2.0e-09 66.2 138 37.7
arahy.Tifrunner.gnm1.ann1.T2T8RF Arachis hypogaea HOM05D012347 ORTHO05D009427 2.0e-09 66.2 135 37.0
BolC3t14114H Brassica oleracea HOM05D010083 ORTHO05D009427 2.0e-09 66.2 136 40.4
CARHR267870 Cardamine hirsuta HOM05D010083 ORTHO05D009427 2.0e-09 66.2 138 39.9
Nn1g06922 Nelumbo nucifera HOM05D009454 ORTHO05D009427 2.0e-09 66.2 128 38.3
Gohir.A01G072300 Gossypium hirsutum HOM05D009454 ORTHO05D009427 2.6e-09 65.9 136 39.0
Thecc.07G059700 Theobroma cacao HOM05D009454 ORTHO05D009427 2.6e-09 65.9 144 36.1
Aa31LG3G10530 Aethionema arabicum HOM05D010083 ORTHO05D009427 4.5e-09 65.1 139 38.1
arahy.Tifrunner.gnm1.ann1.4E7PXM Arachis hypogaea HOM05D012347 ORTHO05D009427 5.8e-09 64.7 135 37.0
Ca_18836_v3 Cicer arietinum L. HOM05D012347 ORTHO05D009427 5.8e-09 64.7 138 36.2
Ca_30095_v3 Cicer arietinum L. HOM05D012347 ORTHO05D009427 5.8e-09 64.7 138 36.2
MSTRG.12947 Avicennia marina HOM05D017288 ORTHO05D009427 9.9e-09 63.9 134 40.3
BcaC01g06313 Brassica carinata HOM05D010083 ORTHO05D009427 1.7e-08 63.2 136 39.7
C03p17020 Brassica napus HOM05D010083 ORTHO05D009427 1.7e-08 63.2 136 39.7
Manes.03G120500 Manihot esculenta HOM05D020515 ORTHO05D009427 1.7e-08 63.2 142 36.6
TPR.G34097 Trifolium pratense HOM05D012347 ORTHO05D009427 2.2e-08 62.8 136 40.4
BcaC04g20326 Brassica carinata HOM05D010083 ORTHO05D009427 2.9e-08 62.4 139 36.7
BolC9t57363H Brassica oleracea HOM05D010083 ORTHO05D009427 2.9e-08 62.4 139 36.7
Thhalv10015006m.g Eutrema salsugineum HOM05D010083 ORTHO05D009427 3.8e-08 62.0 138 37.7
Migut.H01874 Erythranthe guttata HOM05D017288 ORTHO05D009427 4.9e-08 61.6 135 41.5
Peaxi162Scf01365g00030 Petunia axillaris HOM05D017076 ORTHO05D017865 4.9e-08 61.6 135 37.0
BcaB01g04301 Brassica carinata HOM05D010083 ORTHO05D009427 6.4e-08 61.2 139 39.6
Lj3g0021987 Lotus japonicus HOM05D012347 ORTHO05D009427 6.4e-08 61.2 131 34.4
AT5G54585 Arabidopsis thaliana HOM05D010083 ORTHO05D009427 1.4e-07 60.1 140 35.0
Eucgr.K03519 Eucalyptus grandis HOM05D012347 ORTHO05D009427 1.4e-07 60.1 143 39.2
Cc05_g05350 Coffea canephora HOM05D012535 ORTHO05D011476 1.9e-07 59.7 143 33.6
Aqoxy4G01911 Aquilegia oxysepala HOM05D035254 ORTHO05D031288 3.2e-07 58.9 130 32.3
AL8G30040 Arabidopsis lyrata HOM05D010083 ORTHO05D009427 4.2e-07 58.5 140 35.0
A03p14560 Brassica napus HOM05D010083 ORTHO05D009427 4.2e-07 58.5 139 38.8
BraA03t10748Z Brassica rapa HOM05D010083 ORTHO05D009427 4.2e-07 58.5 139 38.8
Oeu042882.1 Olea europaea HOM05D017288 ORTHO05D017865 4.2e-07 58.5 132 37.9
Actinidia27021 Actinidia chinensis HOM05D014456 ORTHO05D011476 5.5e-07 58.2 126 36.5
TWI36G0330 Tripterygium wilfordii HOM05D035254 ORTHO05D031288 5.5e-07 58.2 130 35.4
GSVIVG01030651001 Vitis vinifera HOM05D015989 ORTHO05D011476 7.1e-07 57.8 128 35.2
Hund02152 Selenicereus undatus HOM05D017899 ORTHO05D009427 9.3e-07 57.4 140 34.3
MBI02_g26224_MAGBIO Magnolia biondii HOM05D009454 ORTHO05D009427 2.7e-06 55.8 124 34.7
Psat7g160160 Pisum sativum HOM05D012347 ORTHO05D009427 2.7e-06 55.8 139 33.1
Haze_12967 Corylus avellana HOM05D029042 ORTHO05D015201 4.6e-06 55.1 82 40.2
Actinidia12487 Actinidia chinensis HOM05D014456 ORTHO05D011476 7.9e-06 54.3 130 33.1


User provided reference genes

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