Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 4.1e-60 234.6 121 100.0
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.2e-30 136.7 86 84.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 2.6e-30 135.6 85 84.7
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 4.9e-29 131.3 86 82.6
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.4e-29 131.0 93 78.5
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.4e-29 131.0 93 78.5
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 1.1e-25 120.2 84 75.0
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.8e-24 115.5 82 73.2
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 8.0e-24 114.0 82 72.0
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.4e-23 113.2 94 66.0
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.5e-22 109.8 117 56.4
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 2.6e-22 109.0 78 76.9
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.7e-21 106.3 90 62.2
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 1.1e-20 103.6 82 65.9
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.4e-20 103.2 90 61.1
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 2.4e-20 102.4 78 70.5
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.2e-20 102.1 67 80.6
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 5.4e-20 101.3 78 65.4
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.2e-19 100.1 78 67.9
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.7e-19 99.0 79 64.6
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 7.8e-19 97.4 87 64.4
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 7.8e-19 97.4 87 64.4
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 7.8e-19 97.4 84 61.9
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 2.3e-18 95.9 78 66.7
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.3e-18 95.9 82 65.9
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 3.0e-18 95.5 86 62.8
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 3.0e-18 95.5 78 66.7
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 3.9e-18 95.1 98 54.1
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 6.6e-18 94.4 67 71.6
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 6.6e-18 94.4 66 74.2
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 8.6e-18 94.0 66 75.8
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 8.6e-18 94.0 78 64.1
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.5e-17 93.2 68 72.1
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.9e-17 92.8 66 74.2
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 2.5e-17 92.4 86 59.3
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 3.3e-17 92.0 69 72.5
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 3.3e-17 92.0 61 78.7
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 3.3e-17 92.0 78 65.4
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 3.3e-17 92.0 88 56.8
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 4.3e-17 91.7 68 70.6
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 7.3e-17 90.9 78 60.3
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 9.5e-17 90.5 64 70.3
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 1.2e-16 90.1 85 61.2
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.6e-16 89.7 89 62.9
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.6e-16 89.7 59 76.3
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.6e-16 89.7 65 72.3
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 1.6e-16 89.7 89 60.7
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 2.1e-16 89.4 86 61.6
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 6.2e-16 87.8 89 60.7
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 6.2e-16 87.8 77 61.0
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 8.1e-16 87.4 64 70.3
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.4e-15 86.7 58 77.6
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.4e-15 86.7 64 68.8
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.8e-15 86.3 55 81.8
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.8e-15 86.3 63 69.8
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 3.1e-15 85.5 64 68.8
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.2e-15 84.7 66 63.6
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 5.2e-15 84.7 60 73.3
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 8.9e-15 84.0 66 65.2
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 8.9e-15 84.0 85 54.1
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 1.5e-14 83.2 66 66.7
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 2.0e-14 82.8 73 60.3
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 2.6e-14 82.4 73 60.3
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 3.4e-14 82.0 58 74.1
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.4e-14 81.6 85 51.8
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 9.8e-14 80.5 66 63.6
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 9.8e-14 80.5 66 63.6
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.7e-13 79.7 66 62.1
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.7e-13 79.7 66 62.1
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 3.7e-13 78.6 75 58.7
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 3.7e-13 78.6 56 69.6
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.7e-13 78.6 58 67.2
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 6.4e-13 77.8 75 58.7
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 6.4e-13 77.8 66 60.6
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 8.3e-13 77.4 75 58.7
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.1e-12 77.0 66 62.1
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 1.1e-12 77.0 69 56.5
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.9e-12 76.3 79 55.7
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 2.4e-12 75.9 76 53.9
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 7.1e-12 74.3 87 51.7
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 7.1e-12 74.3 59 69.5
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 9.2e-12 73.9 68 57.4
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.7e-10 69.7 59 61.0
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 6.6e-10 67.8 51 68.6
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.5e-09 66.6 59 59.3
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 1.9e-09 66.2 48 66.7
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 2.5e-09 65.9 57 61.4
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 3.3e-09 65.5 63 58.7
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 3.3e-09 65.5 59 55.9
MELO3C030681.2 Cucumis melo HOM05D007448 ORTHO05D009392 2.8e-08 62.4 48 62.5
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 2.8e-08 62.4 56 57.1
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 4.7e-08 61.6 76 44.7
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.7e-08 61.6 56 51.8
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 4.7e-08 61.6 56 51.8
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.4e-07 60.1 55 50.9
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 1.8e-07 59.7 46 65.2
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 6.8e-07 57.8 59 49.2
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 1.2e-06 57.0 64 56.2
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 1.5e-06 56.6 63 50.8
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 4.4e-06 55.1 95 41.1
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 4.4e-06 55.1 58 50.0


User provided reference genes

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