Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 3.8e-137 491.5 247 100.0
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 8.8e-102 374.0 248 76.6
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 1.0e-97 360.5 254 75.6
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 5.5e-96 354.8 248 75.4
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 2.7e-95 352.4 254 73.2
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 3.6e-95 352.1 250 72.0
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 4.7e-95 351.7 250 72.0
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.8e-94 349.7 252 73.0
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 2.4e-91 339.3 224 74.6
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 4.1e-91 338.6 253 71.1
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 6.5e-89 331.3 248 69.8
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 4.5e-82 308.5 258 64.7
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 5.0e-81 305.1 253 64.4
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 1.9e-80 303.1 261 64.8
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 2.5e-80 302.8 258 62.8
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 6.1e-79 298.1 251 61.0
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 8.0e-79 297.7 249 63.9
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 1.0e-78 297.4 247 62.8
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 9.8e-77 290.8 218 70.2
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 2.2e-76 289.7 257 64.6
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 6.3e-76 288.1 247 63.2
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 4.1e-75 285.4 250 61.2
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 9.2e-75 284.3 249 62.2
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 1.2e-74 283.9 249 60.6
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 7.8e-74 281.2 257 61.5
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 1.0e-73 280.8 201 72.6
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 2.3e-73 279.6 248 58.9
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 6.6e-73 278.1 215 67.0
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 1.5e-72 276.9 235 62.1
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 5.6e-72 275.0 259 60.6
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 7.3e-72 274.6 234 62.4
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 2.1e-71 273.1 254 59.4
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 1.0e-70 270.8 248 57.3
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 6.8e-70 268.1 249 58.6
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 8.9e-70 267.7 248 57.7
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 5.8e-69 265.0 212 67.0
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 7.5e-69 264.6 265 55.8
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 4.9e-68 261.9 250 59.2
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 4.9e-68 261.9 257 58.8
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 6.4e-68 261.5 256 56.6
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 6.4e-68 261.5 255 58.0
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 8.3e-68 261.2 257 56.4
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 1.1e-67 260.8 233 60.1
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 9.2e-67 257.7 257 56.8
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 2.7e-66 256.1 258 55.0
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 1.0e-65 254.2 251 56.6
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 1.3e-65 253.8 259 54.8
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 5.0e-65 251.9 257 56.0
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 5.0e-65 251.9 262 55.0
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 1.6e-63 246.9 262 56.1
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 2.8e-63 246.1 224 56.2
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 2.8e-63 246.1 263 54.0
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 6.2e-63 245.0 169 71.0
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 8.1e-63 244.6 256 57.0
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 5.2e-62 241.9 231 60.2
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 4.4e-61 238.8 231 57.1
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 4.4e-61 238.8 260 53.1
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 7.5e-61 238.0 188 64.9
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 9.8e-61 237.7 212 58.5
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 1.4e-59 233.8 189 64.6
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 1.4e-59 233.8 171 67.8
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 3.2e-59 232.6 172 65.7
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 4.1e-59 232.3 237 53.6
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 5.4e-59 231.9 236 53.4
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 1.6e-58 230.3 148 73.0
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 7.8e-58 228.0 181 62.4
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 7.8e-58 228.0 236 52.5
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 7.8e-58 228.0 181 62.4
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 7.8e-58 228.0 243 53.9
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 1.7e-57 226.9 175 66.3
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 2.3e-57 226.5 196 62.2
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 2.3e-57 226.5 172 65.1
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 1.1e-56 224.2 236 52.1
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 1.9e-56 223.4 257 50.2
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 2.5e-56 223.0 236 51.7
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 4.3e-56 222.2 255 52.2
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 1.2e-55 220.7 277 48.7
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 2.1e-55 219.9 224 57.1
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 1.4e-54 217.2 227 53.3
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 4.0e-54 215.7 227 53.7
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 5.2e-54 215.3 353 41.4
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 6.8e-54 214.9 238 51.7
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 1.2e-53 214.2 259 51.7
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 5.8e-53 211.8 176 61.4
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 1.7e-52 210.3 258 50.0
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 2.9e-52 209.5 232 52.6
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 6.0e-50 201.8 211 53.6
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 3.0e-49 199.5 282 41.1
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 2.5e-48 196.4 173 60.1
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 6.2e-47 191.8 159 59.7
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 3.1e-46 189.5 124 70.2
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 4.0e-46 189.1 142 61.3
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 5.2e-46 188.7 175 60.6
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 7.1e-43 178.3 109 78.0
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 1.7e-41 173.7 230 45.7
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 2.1e-39 166.8 163 55.2
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 4.8e-39 165.6 126 64.3
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 5.3e-38 162.2 145 57.9
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 9.0e-38 161.4 202 45.5
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 5.8e-37 158.7 199 48.2
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 5.8e-37 158.7 199 48.2
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 7.6e-37 158.3 229 44.1
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 1.3e-36 157.5 191 45.5
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 2.5e-32 143.3 98 67.3
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 2.0e-29 133.7 87 72.4
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 1.3e-28 131.0 165 41.2
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 2.3e-25 120.2 87 67.8
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 1.1e-24 117.9 150 41.3
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 6.2e-23 112.1 167 41.9
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 1.0e-20 104.8 89 65.2
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 1.1e-14 84.7 222 37.4
FAN25G1192 Fragaria x ananassa HOM05D000461 ORTHO05D009042 7.6e-13 78.6 54 79.6
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 9.7e-08 61.6 91 42.9
MBI18_g11113_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D009042 1.1e-06 58.2 56 58.9


User provided reference genes

Program Settings