Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G188200 Prunus persica HOM05D001593 ORTHO05D010032 1.7e-79 299.3 156 100.0
MD03G1220500 Malus domestica HOM05D001593 ORTHO05D010032 2.2e-58 229.2 156 76.3
RcHm_v2.0_Chr5g0035101 Rosa chinensis HOM05D001593 ORTHO05D010032 1.1e-54 216.9 153 73.9
MD03G1220400 Malus domestica HOM05D001593 ORTHO05D010032 2.1e-53 212.6 156 74.4
FvH4_3g20810 Fragaria vesca HOM05D001593 ORTHO05D010032 2.4e-52 209.1 154 71.4
FAN16G0784 Fragaria x ananassa HOM05D001593 ORTHO05D010032 9.0e-52 207.2 154 71.4
FAN25G3755 Fragaria x ananassa HOM05D001593 ORTHO05D010032 1.2e-51 206.8 153 71.9
ClCG10G006650 Citrullus lanatus HOM05D001593 ORTHO05D010032 8.5e-34 147.5 156 50.6
Sed0008194 Sechium edule HOM05D001593 ORTHO05D010032 4.2e-33 145.2 156 48.7
CsaV3_3G006040 Cucumis sativus L. HOM05D001593 ORTHO05D010032 6.1e-32 141.4 156 48.1
CsaV3_3G006030 Cucumis sativus L. HOM05D001593 ORTHO05D010032 7.9e-32 141.0 158 47.5
MELO3C016546.2 Cucumis melo HOM05D001593 ORTHO05D010032 5.1e-31 138.3 158 46.2
ClCG10G006610 Citrullus lanatus HOM05D001593 ORTHO05D010032 8.8e-31 137.5 159 46.5
ECA246G1386 Erigeron canadensis HOM05D001593 ORTHO05D010032 3.7e-29 132.1 152 46.1
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 9.1e-28 127.5 151 44.4
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.5e-27 126.7 153 46.4
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 3.4e-27 125.6 153 45.1
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 4.5e-27 125.2 149 47.0
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 7.7e-27 124.4 153 43.8
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.0e-26 124.0 153 42.5
QL08p018774 Quercus lobata HOM05D001593 ORTHO05D010032 1.0e-26 124.0 152 43.4
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 1.7e-26 123.2 151 45.7
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 5.0e-26 121.7 154 46.1
Actinidia05168 Actinidia chinensis HOM05D001593 ORTHO05D010032 1.1e-25 120.6 184 38.6
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 2.5e-25 119.4 152 42.1
Lsat_1_v5_gn_5_7021 Lactuca sativa HOM05D001593 ORTHO05D010032 4.2e-25 118.6 153 42.5
FAN16G2191 Fragaria x ananassa HOM05D001593 ORTHO05D010032 5.5e-25 118.2 154 45.5
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 9.4e-25 117.5 153 45.8
CiPaw.12G122400 Carya illinoinensis HOM05D001593 ORTHO05D010032 2.7e-24 115.9 156 42.9
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 3.6e-24 115.5 151 39.1
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 1.0e-23 114.0 151 39.7
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 3.0e-23 112.5 151 42.4
TPR.G7332 Trifolium pratense HOM05D001593 ORTHO05D010032 5.1e-23 111.7 152 42.8
Sabra16G0268900 Salix brachista HOM05D001593 ORTHO05D010032 8.8e-23 110.9 151 37.7
Aqoxy4G01373 Aquilegia oxysepala HOM05D001593 ORTHO05D010032 1.5e-22 110.2 136 39.7
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 1.5e-22 110.2 153 43.1
VMungo1127G1295 Vigna mungo HOM05D001593 ORTHO05D010032 2.6e-22 109.4 153 41.8
Lsat_1_v5_gn_5_7041 Lactuca sativa HOM05D001593 ORTHO05D010032 4.4e-22 108.6 151 39.7
Lalb_Chr03g0030461 Lupinus albus HOM05D001593 ORTHO05D010032 1.3e-21 107.1 155 36.8
Lalb_Chr17g0345681 Lupinus albus HOM05D001593 ORTHO05D010032 1.3e-21 107.1 156 39.7
VMungo1309G1650 Vigna mungo HOM05D001593 ORTHO05D010032 1.3e-21 107.1 152 40.8
Sabra16G0267000 Salix brachista HOM05D001593 ORTHO05D010032 2.2e-21 106.3 127 41.7
SalBow7G3151 Salvia bowleyana HOM05D001593 ORTHO05D010032 2.2e-21 106.3 151 41.1
arahy.Tifrunner.gnm1.ann1.SVGI7B Arachis hypogaea HOM05D001593 ORTHO05D010032 6.3e-21 104.8 155 38.1
Lj3g0024706 Lotus japonicus HOM05D001593 ORTHO05D010032 6.3e-21 104.8 153 39.2
Phvul.011G153600 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 6.3e-21 104.8 154 40.3
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 1.4e-20 103.6 153 39.9
Lj3g0022181 Lotus japonicus HOM05D001593 ORTHO05D010032 4.1e-20 102.1 153 37.9
CSS0027856 Camellia sinensis var. sinensis HOM05D001593 ORTHO05D010032 7.0e-20 101.3 207 35.3
Medtr3g055120 Medicago truncatula HOM05D001593 ORTHO05D010032 7.0e-20 101.3 154 39.0
Psat4g174160 Pisum sativum HOM05D001593 ORTHO05D010032 9.1e-20 100.9 153 35.3
arahy.Tifrunner.gnm1.ann1.I7A6WZ Arachis hypogaea HOM05D001593 ORTHO05D010032 1.5e-19 100.1 155 36.8
Phvul.011G154100 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 2.6e-19 99.4 152 38.8
Medtr3g055130 Medicago truncatula HOM05D001593 ORTHO05D010032 4.5e-19 98.6 152 39.5
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 5.9e-19 98.2 153 39.9
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 8.5e-18 94.4 153 38.6
CDE05G2529 Ceratophyllum demersum HOM05D001593 ORTHO05D010032 9.4e-17 90.9 118 42.4
Sed0013638 Sechium edule HOM05D001593 ORTHO05D010032 8.0e-16 87.8 155 36.1
PSO832G0778 Papaver somniferum HOM05D001593 ORTHO05D010032 1.0e-15 87.4 152 37.5
FAN21G2072 Fragaria x ananassa HOM05D001593 ORTHO05D010032 1.4e-15 87.0 57 73.7
SEGI_29216 Sequoiadendron giganteum HOM05D001593 ORTHO05D000001 5.2e-15 85.1 122 36.9
SEGI_19703 Sequoiadendron giganteum HOM05D001593 ORTHO05D010032 1.3e-13 80.5 143 35.7
HPP92_000927 Vanilla planifolia HOM05D001593 ORTHO05D010032 5.3e-12 75.1 118 35.6
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 1.6e-11 73.6 146 34.9
PGR031G2663 Punica granatum HOM05D001593 ORTHO05D010032 2.0e-11 73.2 85 44.7
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 3.5e-11 72.4 159 28.3
MELO3C032197.2 Cucumis melo HOM05D001593 ORTHO05D010032 4.5e-11 72.0 58 58.6
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 8.5e-10 67.8 150 29.3
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 1.1e-09 67.4 146 32.2
MD11G1238400 Malus domestica HOM05D001593 ORTHO05D010032 3.2e-09 65.9 101 39.6
COL.COLO4_34686 Corchorus olitorius HOM05D000322 ORTHO05D000186 4.2e-09 65.5 147 25.2
HPP92_011864 Vanilla planifolia HOM05D000322 ORTHO05D000186 7.2e-09 64.7 147 30.6
ATR0693G026 Amborella trichopoda HOM05D000322 ORTHO05D000186 9.4e-09 64.3 140 27.9
RcHm_v2.0_Chr5g0035111 Rosa chinensis HOM05D001593 ORTHO05D010032 1.2e-08 63.9 87 43.7
ATR0693G208 Amborella trichopoda HOM05D000322 ORTHO05D000186 1.6e-08 63.5 126 31.0
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 1.6e-08 63.5 148 31.8
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 1.6e-08 63.5 153 25.5
TWI53G1556 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 1.6e-08 63.5 127 29.1
vmacro08083 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 2.1e-08 63.2 141 26.2
vmacro08086 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 2.7e-08 62.8 141 25.5
PGSC0003DMG400003399 Solanum tuberosum HOM05D001593 ORTHO05D002007 4.7e-08 62.0 128 28.9
vmacro08088 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 4.7e-08 62.0 138 26.1
MBI14_g31144_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 6.1e-08 61.6 76 39.5
PGSC0003DMG400041243 Solanum tuberosum HOM05D001593 ORTHO05D002007 8.0e-08 61.2 128 28.9
DCAR_023317 Daucus carota HOM05D000322 ORTHO05D000186 1.4e-07 60.5 94 31.9
Psat0ss5398g0080 Pisum sativum HOM05D001593 ORTHO05D002007 1.4e-07 60.5 118 27.1
Rhsim04G0231300 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.8e-07 60.1 141 24.8
vmacro08084 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 2.3e-07 59.7 141 25.5
Ca_18955_v3 Cicer arietinum L. HOM05D001593 ORTHO05D002007 4.0e-07 58.9 124 25.0
Rhsim04G0230800 Rhododendron simsii HOM05D000322 ORTHO05D000186 4.0e-07 58.9 138 25.4
MBI14_g31146_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 5.2e-07 58.5 76 36.8
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 5.2e-07 58.5 144 28.5
Cpa.g.sc9.111 Carica papaya HOM05D000322 ORTHO05D000186 6.7e-07 58.2 164 28.0
MELO3C003860.2 Cucumis melo HOM05D001593 ORTHO05D002007 6.7e-07 58.2 151 23.8
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 6.7e-07 58.2 142 31.7
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 6.7e-07 58.2 141 30.5
COL.COLO4_34690 Corchorus olitorius HOM05D000322 ORTHO05D000186 8.8e-07 57.8 162 25.9
CsaV3_2G036450 Cucumis sativus L. HOM05D001593 ORTHO05D002007 8.8e-07 57.8 127 28.3
Rhsim04G0231400 Rhododendron simsii HOM05D000322 ORTHO05D000186 8.8e-07 57.8 141 24.1
HPP92_006905 Vanilla planifolia HOM05D000322 ORTHO05D000186 8.8e-07 57.8 118 32.2
SEGI_36997 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.2e-06 57.4 162 25.3
Solyc06g007860.1 Solanum lycopersicum HOM05D001593 ORTHO05D002007 1.2e-06 57.4 128 28.1
Actinidia40339 Actinidia chinensis HOM05D000322 ORTHO05D000186 1.5e-06 57.0 146 24.7
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 1.5e-06 57.0 120 27.5
Dinv29700 Davidia involucrata HOM05D000322 ORTHO05D000186 1.5e-06 57.0 77 36.4
MBI06_g35209_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 1.5e-06 57.0 73 38.4
Rhsim04G0231000 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.5e-06 57.0 138 26.1
ClCG09G016940 Citrullus lanatus HOM05D001593 ORTHO05D002007 2.0e-06 56.6 122 30.3
QL06p010987 Quercus lobata HOM05D000322 ORTHO05D000186 2.0e-06 56.6 160 26.9
SalBow2G0226 Salvia bowleyana HOM05D000322 ORTHO05D000186 2.0e-06 56.6 77 33.8
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 2.0e-06 56.6 146 28.1
Actinidia40322 Actinidia chinensis HOM05D000322 ORTHO05D000186 2.6e-06 56.2 81 32.1
CAN.G869.19 Capsicum annuum HOM05D001593 ORTHO05D002007 2.6e-06 56.2 147 27.2
Eucgr.A00142 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.6e-06 56.2 149 24.2
CDE01G0729 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.3e-06 55.8 109 32.1
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 3.3e-06 55.8 136 28.7
Manes.15G008600 Manihot esculenta HOM05D000322 ORTHO05D000186 3.3e-06 55.8 161 24.8
PSO170G0063 Papaver somniferum HOM05D001593 ORTHO05D002007 3.3e-06 55.8 150 25.3
Actinidia40340 Actinidia chinensis HOM05D000322 ORTHO05D000186 4.4e-06 55.5 141 24.8
MELO3C003859.2 Cucumis melo HOM05D001593 ORTHO05D002007 4.4e-06 55.5 155 25.8
MELO3C021884.2 Cucumis melo HOM05D001593 ORTHO05D002007 4.4e-06 55.5 127 28.3
CsaV3_2G036440 Cucumis sativus L. HOM05D001593 ORTHO05D002007 4.4e-06 55.5 155 25.8
MBI03_g42550_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 4.4e-06 55.5 145 31.0
PGR031G1022 Punica granatum HOM05D000322 ORTHO05D000186 4.4e-06 55.5 77 32.5
CDE01G0674 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 5.7e-06 55.1 110 30.9
Duzib151G0786 Durio zibethinus HOM05D000322 ORTHO05D000186 5.7e-06 55.1 161 24.8
Sopen06g002710 Solanum pennellii HOM05D001593 ORTHO05D002007 5.7e-06 55.1 124 29.0
Thecc.04G291700 Theobroma cacao HOM05D000322 ORTHO05D000186 5.7e-06 55.1 162 26.5
Actinidia40337 Actinidia chinensis HOM05D000322 ORTHO05D000186 7.5e-06 54.7 81 28.4
DCAR_023318 Daucus carota HOM05D000322 ORTHO05D000186 7.5e-06 54.7 61 37.7
Lj6P649T18 Lonicera japonica HOM05D000322 ORTHO05D000186 7.5e-06 54.7 95 33.7
Lj6P650T19 Lonicera japonica HOM05D000322 ORTHO05D000186 7.5e-06 54.7 95 32.6
Oeu006051.1 Olea europaea HOM05D000322 ORTHO05D000186 7.5e-06 54.7 118 28.0
PSO017G6733 Papaver somniferum HOM05D000197 ORTHO05D000114 7.5e-06 54.7 131 32.8
Dinv11662 Davidia involucrata HOM05D000322 ORTHO05D000186 9.7e-06 54.3 126 27.8
Dinv29696 Davidia involucrata HOM05D000322 ORTHO05D000186 9.7e-06 54.3 84 32.1
Duzib212G0928 Durio zibethinus HOM05D000322 ORTHO05D000186 9.7e-06 54.3 161 26.1
Glyma.15G146500 Glycine max HOM05D000322 ORTHO05D000186 9.7e-06 54.3 158 27.8
Lj3A721T47 Lonicera japonica HOM05D000322 ORTHO05D000186 9.7e-06 54.3 163 26.4
Oeu016263.1 Olea europaea HOM05D000322 ORTHO05D000186 9.7e-06 54.3 110 23.6
PSO017G5859 Papaver somniferum HOM05D000197 ORTHO05D000114 9.7e-06 54.3 141 29.1
PSO407G0401 Papaver somniferum HOM05D000197 ORTHO05D000114 9.7e-06 54.3 130 26.2
PSO478G4376 Papaver somniferum HOM05D000197 ORTHO05D000114 9.7e-06 54.3 141 29.1
HPP92_010019 Vanilla planifolia HOM05D000197 ORTHO05D000114 9.7e-06 54.3 141 29.8


User provided reference genes

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