Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2540.4 1260 100.0
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2394.0 1260 93.8
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2361.3 1260 93.1
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2253.8 1260 88.9
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2253.8 1276 88.3
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2248.0 1260 88.7
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2243.4 1260 88.6
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2242.6 1260 88.5
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2231.4 1260 88.1
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2120.1 1263 83.3
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2112.0 1260 83.2
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2111.6 1260 82.6
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2099.3 1260 82.0
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2094.7 1260 81.9
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2092.4 1259 81.5
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2090.8 1259 81.4
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2090.1 1258 80.8
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2081.6 1267 81.1
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2080.4 1260 81.8
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2074.7 1262 81.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2059.3 1267 80.3
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2050.8 1261 80.6
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2048.5 1260 79.4
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2046.6 1262 79.9
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 2045.0 1300 77.5
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2042.3 1260 79.7
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2041.5 1260 79.7
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 2038.1 1261 79.6
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 2035.8 1261 79.1
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 2019.2 1260 79.0
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 2017.3 1255 79.1
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 2011.1 1250 80.9
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2005.7 1262 79.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 2000.3 1518 68.9
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1994.5 1283 76.9
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1991.5 1258 78.4
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1984.5 1258 78.5
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1983.4 1258 78.9
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1976.1 1258 78.1
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1971.8 1258 78.0
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1968.4 1264 76.4
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1967.6 1263 77.1
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1966.0 1330 74.7
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1966.0 1261 76.1
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1962.2 1264 76.1
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1960.7 1273 76.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1956.0 1262 76.9
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1952.6 1262 75.5
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1950.3 1265 76.4
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1947.6 1267 75.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1947.2 1266 76.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1945.6 1265 76.0
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1945.2 1260 76.2
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1941.8 1260 76.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1941.0 1262 75.9
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1934.8 1288 75.3
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1932.5 1294 74.0
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1930.6 1243 76.5
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1929.5 1264 74.8
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1262 75.3
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1927.1 1267 75.2
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1927.1 1267 75.1
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1925.6 1268 75.2
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1924.4 1268 75.2
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1924.4 1258 76.9
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1923.7 1260 74.9
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1922.9 1261 74.9
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1921.7 1273 74.8
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1921.7 1262 76.5
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1920.6 1260 74.8
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1918.3 1270 74.5
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1266 74.6
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1913.3 1262 75.2
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1267 74.6
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1907.1 1265 74.4
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1905.6 1269 73.0
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1903.3 1259 73.9
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1903.3 1267 74.6
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1899.8 1262 74.6
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1898.2 1267 74.2
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1895.9 1264 74.0
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1895.6 1269 74.2
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1887.8 1264 73.9
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1877.8 1274 75.1
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1875.1 1246 74.7
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1873.6 1171 79.2
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1871.3 1260 73.4
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1826.6 1326 69.4
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1824.7 1163 77.6
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1794.6 1257 70.5
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1794.2 1242 72.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1763.4 1262 69.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1681.0 1035 80.4
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1665.6 1078 75.1
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1664.0 1097 74.5
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1645.9 1233 66.2
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1634.0 1008 80.5
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1626.7 1265 64.3
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1590.5 1058 75.0
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1563.1 1062 73.1
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1550.8 1038 74.6
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1486.5 926 79.8
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1482.2 1103 69.3
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1468.8 1016 71.9
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1420.6 856 81.7
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1305.8 1397 49.9
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1213.7 1262 53.2
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1186.4 778 76.2
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1186.4 1357 47.5
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1132.5 746 73.6
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1110.1 865 65.1
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 0.0e+00 1092.4 1012 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 7.3e-285 984.6 1163 46.9
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 5.0e-278 961.8 592 80.4
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.6e-258 894.8 536 81.3
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 4.6e-255 885.6 907 54.0
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 7.4e-213 745.3 446 81.4
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 4.2e-208 729.6 1438 33.5
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 2.3e-198 697.2 454 76.4
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 6.2e-159 566.2 306 88.2
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-158 565.5 491 59.5
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 9.9e-125 452.6 316 68.7
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.4e-102 379.0 205 87.3
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.6e-98 364.4 316 62.0
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 3.8e-92 344.4 372 48.4
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.7e-90 337.4 194 81.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 5.3e-86 323.9 256 62.9
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 2.0e-80 305.4 172 84.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-79 302.8 237 67.5
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 2.8e-79 301.6 159 91.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 2.4e-78 298.5 233 67.4
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-74 285.8 260 58.8
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-74 285.8 260 58.8
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-74 285.8 260 58.8
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.8e-73 280.0 262 55.0
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.7e-71 274.6 152 83.6
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.1e-70 271.6 452 36.9
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.7e-68 265.8 180 70.6
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 5.0e-68 264.2 198 68.2
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.0e-60 240.0 154 76.6
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.6e-56 225.3 165 69.1
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.3e-51 208.4 132 75.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.1e-49 201.8 147 65.3
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.0e-49 201.4 140 67.1
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.0e-48 199.1 109 84.4
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 5.8e-48 197.6 213 49.8
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.7e-47 194.9 109 83.5
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.0e-46 190.7 109 82.6
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.0e-46 190.7 109 82.6
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.6e-44 183.7 109 80.7
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 4.7e-42 177.9 130 68.5
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.2e-42 177.6 121 75.2
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 3.4e-40 171.8 111 74.8
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.8e-40 171.0 98 81.6
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 6.0e-37 161.0 102 77.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 8.6e-36 157.1 98 79.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.6e-34 152.9 81 82.7
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 5.8e-32 144.4 130 58.5
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.7e-31 141.7 87 72.4
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-29 136.3 94 72.3
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 2.8e-26 125.6 65 84.6
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 7.8e-21 107.5 107 46.7
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 2.3e-20 105.9 111 54.1
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 3.9e-20 105.1 57 86.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 2.5e-19 102.4 95 55.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.3e-19 100.9 62 75.8
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.3e-18 100.1 540 24.8
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 5.3e-17 94.7 81 58.0
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.4e-16 91.7 52 76.9
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 9.3e-14 84.0 99 46.5
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 5.1e-12 78.2 45 82.2
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 4.3e-11 75.1 69 50.7
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 8.1e-10 70.9 388 22.2
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.6e-08 65.9 52 63.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.1e-06 60.5 43 67.4


User provided reference genes

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