Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.0e-83 312.4 154 100.0
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 2.8e-53 212.2 137 75.9
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.1e-44 183.7 138 63.8
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.2e-43 180.3 136 66.9
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.0e-43 179.5 138 61.6
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 5.8e-43 177.9 141 65.2
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 9.8e-43 177.2 140 65.0
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 2.9e-42 175.6 138 62.3
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 8.3e-42 174.1 121 66.9
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 4.1e-41 171.8 129 63.6
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 5.4e-41 171.4 136 59.6
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.1e-41 171.0 138 62.3
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 7.1e-41 171.0 130 64.6
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.6e-40 169.9 129 65.1
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.1e-40 169.5 113 70.8
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.7e-40 169.1 121 66.1
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.5e-40 168.7 151 54.3
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 3.5e-40 168.7 136 61.8
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 6.0e-40 167.9 123 65.0
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 7.8e-40 167.5 126 62.7
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.3e-39 166.8 127 63.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 6.6e-39 164.5 125 60.8
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 1.9e-38 162.9 123 63.4
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.9e-38 162.9 117 65.8
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.9e-38 162.9 136 59.6
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.3e-38 161.8 117 65.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 5.6e-38 161.4 125 64.0
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 7.3e-38 161.0 142 57.7
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.6e-37 159.8 134 60.4
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-37 159.8 117 64.1
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.6e-37 159.8 140 56.4
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.6e-37 159.8 138 54.3
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 2.8e-37 159.1 127 60.6
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-37 159.1 117 64.1
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-37 159.1 117 64.1
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-37 159.1 117 64.1
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-37 159.1 117 64.1
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 2.8e-37 159.1 124 65.3
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.6e-37 158.7 117 64.1
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.7e-37 158.3 122 65.6
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 4.7e-37 158.3 143 55.9
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 8.1e-37 157.5 113 69.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.1e-37 157.5 129 62.0
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-36 157.1 117 63.2
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.4e-36 156.8 128 58.6
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.4e-36 156.8 133 56.4
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.3e-36 156.0 117 63.2
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.3e-36 156.0 136 56.6
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 3.1e-36 155.6 121 63.6
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 4.0e-36 155.2 124 58.9
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 5.2e-36 154.8 111 66.7
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 6.8e-36 154.5 124 58.1
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.5e-35 153.3 124 58.9
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 1.5e-35 153.3 133 56.4
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.4e-35 152.1 124 60.5
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 3.4e-35 152.1 131 59.5
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 4.4e-35 151.8 133 55.6
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.7e-34 149.8 144 52.1
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.7e-34 148.7 150 50.7
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 4.9e-34 148.3 136 54.4
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.4e-34 147.5 117 60.7
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-33 147.1 111 65.8
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-33 147.1 117 61.5
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-33 147.1 117 60.7
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 2.4e-33 146.0 124 55.6
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.4e-33 144.8 117 59.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 7.1e-33 144.4 121 56.2
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 9.2e-33 144.1 124 56.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 7.8e-32 141.0 126 57.9
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 7.8e-32 141.0 133 53.4
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.0e-31 140.6 128 53.9
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 3.9e-31 138.7 117 55.6
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 6.6e-31 137.9 166 47.0
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 3.3e-30 135.6 125 53.6
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.6e-29 133.3 139 51.1
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.6e-29 133.3 139 51.1
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.6e-29 133.3 140 50.0
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 4.7e-29 131.7 137 54.7
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.1e-28 130.6 128 56.2
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 6.8e-28 127.9 90 65.6
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.9e-26 122.5 124 53.2
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 8.4e-26 120.9 128 53.1
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.4e-25 119.4 223 35.4
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 7.1e-25 117.9 123 52.0
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.2e-24 117.1 121 51.2
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 2.7e-24 115.9 103 53.4
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 3.5e-24 115.5 124 48.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 4.6e-24 115.2 128 50.0
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 4.6e-24 115.2 70 72.9
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-23 114.0 82 63.4
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.3e-23 113.6 124 51.6
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.9e-23 112.1 107 50.5
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 4.3e-22 108.6 86 66.3
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.3e-21 107.1 134 44.8
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.8e-21 105.1 94 54.3
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 6.2e-21 104.8 120 44.2
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 8.1e-21 104.4 127 45.7
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.1e-21 104.4 82 61.0
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.8e-20 103.2 133 44.4
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 5.3e-20 101.7 115 45.2
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 5.3e-20 101.7 129 42.6
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 6.9e-20 101.3 128 44.5
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 9.0e-20 100.9 123 44.7
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 9.0e-20 100.9 124 46.8
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 2.0e-19 99.8 117 46.2
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 2.6e-19 99.4 118 48.3
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 4.4e-19 98.6 123 44.7
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 5.8e-19 98.2 128 43.8
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 7.6e-19 97.8 123 42.3
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 7.6e-19 97.8 113 49.6
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.7e-18 96.7 123 44.7
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.2e-18 96.3 132 39.4
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 2.9e-18 95.9 68 60.3
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 3.8e-18 95.5 119 46.2
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 3.8e-18 95.5 75 57.3
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 3.8e-18 95.5 114 50.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.4e-17 93.6 147 38.1
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.4e-17 93.6 122 44.3
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.9e-15 85.5 114 43.0
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 1.1e-14 84.0 101 46.5
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.5e-14 83.6 125 41.6
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.5e-14 83.6 125 39.2
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.6e-13 79.0 64 56.2
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 6.2e-13 78.2 50 74.0
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.4e-12 77.0 84 45.2
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.8e-12 76.6 64 54.7
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.9e-12 74.7 57 66.7
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.5e-11 73.6 53 64.2
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.4e-11 72.4 57 64.9
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 8.4e-10 67.8 95 41.1
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 8.4e-10 67.8 60 50.0
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 8.4e-10 67.8 121 35.5
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 4.2e-09 65.5 56 62.5
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 7.1e-09 64.7 62 48.4
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 9.3e-09 64.3 56 58.9
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 2.5e-06 56.2 85 41.2
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.3e-06 55.8 85 41.2
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 5.6e-06 55.1 46 52.2


User provided reference genes

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