Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 3.7e-25 117.5 61 100.0
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 2.7e-20 101.3 61 83.6
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 6.1e-20 100.1 61 83.6
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 6.7e-19 96.7 58 81.0
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 6.7e-19 96.7 58 81.0
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 6.7e-19 96.7 58 82.8
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.3e-18 94.4 56 82.1
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.3e-18 94.4 56 82.1
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 3.3e-18 94.4 56 82.1
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 1.3e-17 92.4 61 77.0
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 1.6e-17 92.0 56 82.1
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 4.8e-17 90.5 58 75.9
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 4.8e-17 90.5 58 75.9
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 1.1e-16 89.4 61 72.1
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 1.4e-16 89.0 58 77.6
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 1.4e-16 89.0 61 75.4
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.4e-16 89.0 61 72.1
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.4e-16 89.0 61 72.1
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 4.1e-16 87.4 56 73.2
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 4.1e-16 87.4 53 79.2
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 4.1e-16 87.4 58 74.1
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 4.1e-16 87.4 61 70.5
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 4.1e-16 87.4 61 73.8
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 5.3e-16 87.0 54 75.9
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 5.3e-16 87.0 61 73.8
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 5.3e-16 87.0 59 71.2
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 6.9e-16 86.7 56 76.8
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 6.9e-16 86.7 58 74.1
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 1.5e-15 85.5 61 75.4
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 4.5e-15 84.0 62 74.2
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 4.5e-15 84.0 59 69.5
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 5.9e-15 83.6 63 76.2
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 7.7e-15 83.2 58 70.7
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 1.3e-14 82.4 58 72.4
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 1.3e-14 82.4 59 67.8
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 2.2e-14 81.6 59 66.1
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 2.2e-14 81.6 56 71.4
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 2.9e-14 81.3 49 77.6
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 3.8e-14 80.9 55 70.9
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 5.0e-14 80.5 56 66.1
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 6.5e-14 80.1 56 66.1
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 6.5e-14 80.1 56 66.1
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 8.5e-14 79.7 61 65.6
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 8.5e-14 79.7 61 67.2
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 1.1e-13 79.3 61 65.6
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.1e-13 79.3 53 75.5
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.1e-13 79.3 56 66.1
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 1.4e-13 79.0 49 83.7
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 1.9e-13 78.6 58 65.5
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 1.9e-13 78.6 52 69.2
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 3.2e-13 77.8 61 65.6
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 3.2e-13 77.8 61 65.6
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 4.2e-13 77.4 60 60.0
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 4.2e-13 77.4 61 65.6
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 4.2e-13 77.4 61 65.6
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 4.2e-13 77.4 56 69.6
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 9.4e-13 76.3 53 67.9
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 9.4e-13 76.3 53 67.9
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 9.4e-13 76.3 53 67.9
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.2e-12 75.9 57 64.9
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 1.6e-12 75.5 63 61.9
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 3.6e-12 74.3 60 60.0
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 3.0e-11 71.2 55 61.8
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 6.7e-11 70.1 59 55.9
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 6.7e-11 70.1 59 61.0
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 6.7e-11 70.1 59 61.0
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 1.5e-10 68.9 61 59.0
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 2.6e-10 68.2 52 57.7
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.6e-10 68.2 46 65.2
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.6e-10 68.2 46 65.2
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 4.4e-10 67.4 43 72.1
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 7.4e-10 66.6 59 62.7
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 7.4e-10 66.6 42 71.4
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 1.7e-09 65.5 54 61.1
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 2.2e-09 65.1 46 63.0
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 2.8e-09 64.7 41 73.2
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 2.8e-09 64.7 59 62.7
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 3.7e-09 64.3 58 55.2
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 1.8e-08 62.0 45 62.2
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 5.3e-08 60.5 47 63.8
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 5.3e-08 60.5 43 60.5
arahy.Tifrunner.gnm1.ann1.3FW3ZZ Arachis hypogaea HOM05D032050 ORTHO05D031570 6.5e-06 53.5 26 84.6
arahy.Tifrunner.gnm1.ann1.L8EPAF Arachis hypogaea HOM05D032050 ORTHO05D031570 8.5e-06 53.1 25 88.0


User provided reference genes

Program Settings