Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.2e-100 369.8 333 100.0
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.1e-83 314.3 169 95.3
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 7.2e-83 311.6 169 94.1
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.2e-83 311.6 169 94.1
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.6e-82 309.3 169 93.5
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 6.1e-82 308.5 172 92.4
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 6.1e-82 308.5 172 92.4
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 6.8e-81 305.1 172 90.1
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 7.5e-80 301.6 172 88.4
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.1e-78 297.7 172 88.4
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.4e-78 297.4 172 86.0
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.8e-78 297.0 172 87.8
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 2.4e-78 296.6 172 87.2
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 4.1e-78 295.8 172 89.0
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 5.4e-78 295.4 172 84.9
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.4e-78 295.4 172 86.0
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 5.4e-78 295.4 172 86.6
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 9.1e-78 294.7 172 87.2
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 1.2e-77 294.3 173 87.9
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.2e-77 294.3 172 85.5
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.6e-77 293.9 172 86.0
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.5e-77 292.7 172 84.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 4.5e-77 292.4 172 85.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 1.0e-76 291.2 172 84.3
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.0e-76 291.2 171 86.5
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.7e-76 290.4 172 85.5
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.3e-76 290.0 172 84.9
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.9e-76 289.7 168 86.3
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.8e-76 289.3 172 84.9
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.8e-76 289.3 172 84.9
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 3.8e-76 289.3 170 84.1
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.8e-76 289.3 172 85.5
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.8e-76 289.3 172 85.5
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.8e-76 289.3 172 86.0
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 3.8e-76 289.3 172 84.9
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 8.6e-76 288.1 172 85.5
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 8.6e-76 288.1 172 85.5
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.5e-75 287.3 172 83.1
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 5.5e-75 285.4 172 83.7
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.2e-74 284.3 172 82.6
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.2e-74 284.3 168 84.5
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.6e-74 283.9 171 84.2
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 1.6e-74 283.9 172 82.6
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.4e-73 280.8 171 83.0
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.8e-73 280.4 172 82.6
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 2.3e-73 280.0 172 81.4
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 4.0e-73 279.3 172 82.6
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 6.8e-73 278.5 172 82.0
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 8.9e-73 278.1 172 82.0
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.3e-71 274.2 172 83.1
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.7e-71 273.9 172 79.7
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.8e-71 273.1 169 82.2
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 6.3e-71 271.9 172 79.7
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 6.3e-71 271.9 172 79.7
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 6.3e-71 271.9 172 79.7
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 8.3e-71 271.6 165 82.4
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.4e-70 270.8 168 81.0
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 1.8e-70 270.4 172 82.0
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 7.0e-70 268.5 172 80.8
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.2e-69 267.7 172 79.1
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 7.8e-69 265.0 171 78.4
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.0e-68 264.6 171 78.4
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.0e-68 264.6 171 78.4
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.0e-68 264.6 171 78.4
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.0e-68 264.6 171 78.4
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.0e-68 264.6 171 78.4
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.7e-68 263.8 171 78.9
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 6.6e-68 261.9 172 77.9
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.1e-67 261.2 171 78.4
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.1e-67 261.2 171 78.4
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.5e-67 260.8 172 79.1
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.5e-67 260.0 205 69.3
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 7.3e-67 258.5 200 68.5
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 7.3e-67 258.5 217 65.9
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.6e-66 257.3 168 77.4
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.1e-66 256.9 167 77.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 3.1e-65 253.1 170 76.5
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 6.8e-65 251.9 168 78.0
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 6.8e-65 251.9 152 88.2
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 5.8e-64 248.8 170 76.5
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 9.8e-64 248.1 172 73.8
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.7e-63 247.3 149 85.9
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 4.9e-63 245.7 196 67.9
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 8.3e-63 245.0 150 84.0
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 2.4e-62 243.4 167 72.5
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 4.1e-62 242.7 156 79.5
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.3e-60 236.9 171 72.5
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.1e-59 234.6 203 65.0
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.2e-58 231.1 167 69.5
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.8e-57 227.3 150 79.3
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.1e-57 226.5 189 66.7
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 8.9e-57 224.9 168 68.5
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 8.9e-57 224.9 156 75.0
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.3e-52 211.1 167 66.5
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 3.9e-52 209.5 169 64.5
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 9.5e-51 204.9 119 92.4
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 2.3e-49 200.3 150 68.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.0e-49 199.5 131 75.6
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 9.6e-35 151.8 72 95.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 6.9e-33 145.6 108 72.2
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 6.9e-33 145.6 108 72.2
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 4.9e-31 139.4 124 64.5
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.9e-30 137.5 65 96.9
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 7.1e-30 135.6 93 80.6
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 4.6e-29 132.9 67 89.6
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 9.0e-25 118.6 163 43.6
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.4e-24 116.7 93 68.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.2e-21 108.2 66 69.7
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 2.7e-21 107.1 171 36.8
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.8e-18 97.1 67 74.6
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 2.8e-18 97.1 79 69.6
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.7e-18 96.7 114 55.3
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 8.1e-18 95.5 69 76.8
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.1e-17 93.6 78 70.5
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.0e-16 90.9 78 67.9
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 3.9e-12 76.6 51 80.4
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 2.8e-10 70.5 40 90.0
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 4.8e-10 69.7 64 62.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.4e-09 67.4 32 90.6
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 2.5e-06 57.4 35 71.4


User provided reference genes

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