Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 9.3e-101 370.2 181 100.0
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 1.8e-91 339.3 179 89.4
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 3.3e-90 335.1 179 91.1
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.3e-90 335.1 179 91.1
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 9.7e-90 333.6 179 90.5
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 9.7e-90 333.6 179 89.9
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 3.4e-87 325.1 181 85.6
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 5.9e-87 324.3 179 84.9
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.0e-86 323.6 179 85.5
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 2.2e-86 322.4 181 84.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.9e-85 319.3 181 84.5
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.9e-85 319.3 181 83.4
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.2e-85 318.2 181 82.9
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.2e-85 318.2 181 82.9
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 4.2e-85 318.2 181 84.5
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 4.2e-85 318.2 181 84.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 4.2e-85 318.2 181 84.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.2e-85 318.2 179 84.4
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 5.5e-85 317.8 181 83.4
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 7.2e-85 317.4 179 83.8
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 7.2e-85 317.4 181 84.0
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-84 316.6 181 83.4
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.2e-84 316.6 181 84.0
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.2e-84 316.6 181 84.0
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.2e-84 316.6 179 84.4
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.1e-84 315.8 181 81.8
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.7e-84 315.5 181 83.4
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.7e-84 315.5 181 83.4
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 2.7e-84 315.5 181 84.0
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 3.6e-84 315.1 181 84.0
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.6e-84 315.1 179 82.1
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 4.6e-84 314.7 181 83.4
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 4.6e-84 314.7 181 82.3
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 4.6e-84 314.7 181 83.4
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 4.6e-84 314.7 179 82.1
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 6.1e-84 314.3 181 82.3
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 6.1e-84 314.3 179 81.0
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 7.9e-84 313.9 181 82.3
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 7.9e-84 313.9 181 80.7
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 1.0e-83 313.5 179 82.7
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.0e-83 313.5 179 82.7
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.8e-83 312.8 181 82.3
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.3e-83 312.4 181 81.8
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 2.3e-83 312.4 179 81.0
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 3.0e-83 312.0 179 81.6
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 3.9e-83 311.6 179 83.2
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 3.9e-83 311.6 181 81.8
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 5.1e-83 311.2 179 82.7
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 6.7e-83 310.8 181 80.1
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 8.8e-83 310.5 181 81.2
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.1e-82 310.1 180 81.7
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 2.0e-82 309.3 179 79.3
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 2.0e-82 309.3 179 79.3
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.0e-82 309.3 181 80.7
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 4.3e-82 308.1 200 75.5
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 4.3e-82 308.1 181 79.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 7.4e-82 307.4 181 79.6
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 9.7e-82 307.0 179 79.3
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.3e-81 306.6 179 81.0
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.3e-81 306.6 181 81.2
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 2.2e-81 305.8 181 79.6
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 8.2e-81 303.9 179 78.8
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 3.1e-80 302.0 180 80.6
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 4.1e-80 301.6 181 78.5
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.2e-79 300.1 181 78.5
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.5e-79 299.7 181 77.9
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 2.0e-79 299.3 179 77.1
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 2.6e-79 298.9 181 78.5
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 3.4e-79 298.5 181 78.5
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 4.5e-79 298.1 205 72.7
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 8.5e-78 293.9 179 77.1
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 4.2e-77 291.6 204 70.6
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 4.7e-76 288.1 166 81.3
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 7.9e-76 287.3 188 73.9
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.4e-75 286.6 160 86.2
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 2.3e-75 285.8 181 75.7
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 2.6e-74 282.3 159 86.2
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 9.7e-74 280.4 181 74.6
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 2.2e-73 279.3 158 84.2
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.8e-73 278.9 178 74.7
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 4.8e-73 278.1 177 74.6
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.3e-70 270.0 160 78.1
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 6.5e-70 267.7 161 78.3
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 6.5e-70 267.7 161 77.0
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 8.5e-70 267.3 178 68.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 2.5e-69 265.8 176 70.5
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.2e-68 263.5 157 77.7
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.2e-68 263.5 179 72.1
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.6e-68 263.1 168 76.8
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 1.4e-67 260.0 161 73.9
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 3.0e-67 258.8 173 75.7
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 7.4e-66 254.2 154 78.6
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 9.7e-66 253.8 162 74.1
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 9.7e-66 253.8 177 66.1
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.6e-63 246.5 176 64.8
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 1.6e-63 246.5 219 60.7
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.9e-61 239.6 140 79.3
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 5.5e-61 238.0 140 79.3
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 3.0e-59 232.3 172 63.4
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.3e-58 228.8 180 67.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 6.1e-52 208.0 115 81.7
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 5.7e-50 201.4 175 53.1
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 2.0e-47 193.0 122 73.8
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 5.0e-46 188.3 118 72.0
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.2e-42 177.2 131 62.6
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.6e-42 176.0 187 52.9
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.6e-42 176.0 187 52.9
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.5e-37 159.5 115 71.3
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 2.5e-37 159.5 93 75.3
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 3.3e-37 159.1 174 42.0
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 3.3e-37 159.1 174 44.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.6e-36 155.6 97 72.2
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 2.9e-33 146.0 91 72.5
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 4.6e-31 138.7 112 60.7
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 3.9e-30 135.6 178 44.4
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 6.4e-25 118.2 79 65.8
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 7.0e-24 114.8 100 62.0
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 6.6e-22 108.2 72 66.7
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-20 104.0 101 59.4
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 6.2e-20 101.7 65 73.8
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 3.4e-18 95.9 56 85.7
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 2.9e-17 92.8 56 78.6
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 6.0e-15 85.1 47 85.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.5e-13 80.5 51 72.5
Cfa024503 Carpinus fangiana HOM05D006675 ORTHO05D008302 8.4e-09 64.7 167 26.3
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.7e-06 57.0 33 78.8


User provided reference genes

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