Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 7.6e-42 173.3 82 100.0
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.0e-34 148.7 82 86.6
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.0e-34 148.7 82 86.6
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 7.6e-34 146.7 82 85.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 6.0e-31 137.1 82 78.0
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.3e-30 136.0 82 78.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.3e-30 136.0 82 78.0
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 5.1e-30 134.0 82 76.8
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.1e-29 132.9 82 76.8
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 3.6e-28 127.9 82 72.0
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 3.6e-28 127.9 82 75.6
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 4.8e-28 127.5 80 75.0
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.4e-27 125.9 80 73.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 2.4e-27 125.2 82 74.4
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 2.4e-27 125.2 82 70.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 4.0e-27 124.4 83 74.7
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 9.0e-27 123.2 82 68.3
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.2e-26 122.9 82 70.7
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 2.0e-26 122.1 83 72.3
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 2.0e-26 122.1 84 69.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 5.8e-26 120.6 82 70.7
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 7.6e-26 120.2 82 69.5
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 7.6e-26 120.2 82 70.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 7.6e-26 120.2 81 74.1
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 9.9e-26 119.8 82 68.3
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 9.9e-26 119.8 82 70.7
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 9.9e-26 119.8 82 69.5
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.7e-25 119.0 81 67.9
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.2e-25 118.6 82 70.7
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.2e-25 118.6 82 70.7
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.9e-25 118.2 82 67.1
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.8e-25 117.9 82 68.3
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 3.8e-25 117.9 82 69.5
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 6.4e-25 117.1 82 68.3
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.1e-24 116.3 82 69.5
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.4e-24 115.9 82 67.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-24 115.9 82 68.3
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.9e-24 115.5 82 65.9
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 3.2e-24 114.8 82 65.9
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.2e-24 114.8 82 65.9
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 3.2e-24 114.8 82 65.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 5.4e-24 114.0 82 67.1
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 7.1e-24 113.6 68 76.5
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.1e-24 113.6 82 69.5
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 9.3e-24 113.2 82 65.9
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 9.3e-24 113.2 82 67.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 9.3e-24 113.2 70 70.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 9.3e-24 113.2 82 64.6
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 9.3e-24 113.2 82 65.9
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.2e-23 112.8 82 65.9
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.2e-23 112.8 82 65.9
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.6e-23 112.5 82 64.6
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.1e-23 112.1 82 68.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 2.1e-23 112.1 82 69.5
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.1e-23 112.1 82 65.9
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.1e-23 112.1 82 64.6
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 2.7e-23 111.7 82 65.9
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.5e-23 111.3 62 75.8
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.6e-23 110.9 81 66.7
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 6.0e-23 110.5 82 67.1
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 7.9e-23 110.2 82 63.4
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 7.9e-23 110.2 82 67.1
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 1.0e-22 109.8 75 73.3
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.3e-22 109.4 82 67.1
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.3e-22 108.6 82 64.6
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 2.3e-22 108.6 80 65.0
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 3.0e-22 108.2 82 59.8
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 3.0e-22 108.2 82 64.6
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 3.0e-22 108.2 75 70.7
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 3.0e-22 108.2 80 63.8
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 3.9e-22 107.8 82 67.1
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 3.9e-22 107.8 80 63.8
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 3.9e-22 107.8 82 62.2
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 5.1e-22 107.5 80 61.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 5.1e-22 107.5 82 57.3
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 6.7e-22 107.1 82 61.0
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 6.7e-22 107.1 63 76.2
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 6.7e-22 107.1 82 61.0
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 8.7e-22 106.7 76 67.1
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.1e-21 106.3 74 67.6
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.1e-21 106.3 74 67.6
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.1e-21 106.3 82 61.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.9e-21 105.5 67 71.6
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.9e-21 105.5 63 73.0
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.9e-21 105.5 54 83.3
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.3e-21 104.8 67 71.6
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.3e-21 104.8 80 60.0
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 3.3e-21 104.8 80 62.5
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 4.3e-21 104.4 82 61.0
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 5.6e-21 104.0 80 63.8
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 5.6e-21 104.0 67 70.1
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 5.6e-21 104.0 54 83.3
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 7.4e-21 103.6 82 61.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 9.6e-21 103.2 67 74.6
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.3e-20 102.8 58 75.9
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.6e-20 102.4 56 80.4
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 1.6e-20 102.4 54 81.5
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.6e-20 102.4 82 59.8
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.1e-20 102.1 71 67.6
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 2.1e-20 102.1 54 81.5
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.1e-20 102.1 82 59.8
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.8e-20 101.7 82 59.8
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.8e-20 101.7 59 76.3
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.7e-20 101.3 82 61.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 4.8e-20 100.9 82 59.8
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 4.8e-20 100.9 82 59.8
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 6.2e-20 100.5 50 84.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 8.1e-20 100.1 54 79.6
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 8.1e-20 100.1 54 79.6
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 8.1e-20 100.1 80 57.5
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 8.1e-20 100.1 56 76.8
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 8.1e-20 100.1 52 82.7
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 1.1e-19 99.8 77 61.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.4e-19 99.4 57 75.4
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.4e-19 99.4 82 61.0
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.8e-19 99.0 82 61.0
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.4e-19 98.6 82 61.0
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 2.4e-19 98.6 78 59.0
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.1e-19 98.2 82 56.1
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.3e-19 97.4 91 56.0
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 5.3e-19 97.4 53 75.5
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 5.3e-19 97.4 71 64.8
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 5.3e-19 97.4 61 72.1
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 6.9e-19 97.1 50 84.0
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 6.9e-19 97.1 80 57.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.2e-18 96.3 59 72.9
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.2e-18 96.3 82 57.3
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.2e-18 96.3 82 57.3
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.2e-18 96.3 82 57.3
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.2e-18 96.3 82 57.3
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.2e-18 96.3 82 54.9
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.2e-18 96.3 47 83.0
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.5e-18 95.9 58 72.4
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 3.4e-18 94.7 86 55.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 3.4e-18 94.7 86 55.8
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 5.8e-18 94.0 77 58.4
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 7.6e-18 93.6 68 58.8
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.0e-17 93.2 46 84.8
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.7e-17 92.4 82 57.3
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 2.2e-17 92.0 64 62.5
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 2.9e-17 91.7 75 60.0
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 4.9e-17 90.9 60 68.3
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 4.9e-17 90.9 60 68.3
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.5e-17 90.5 90 52.2
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 8.4e-17 90.1 43 88.4
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.1e-16 89.7 42 85.7
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.5e-16 88.6 75 64.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 3.2e-16 88.2 65 63.1
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.2e-15 86.3 76 57.9
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 6.2e-12 73.9 78 50.0
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 2.6e-10 68.6 52 65.4
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 3.4e-10 68.2 64 53.1
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 3.4e-10 68.2 50 64.0
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 3.0e-06 55.1 54 53.7


User provided reference genes

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