Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 4.0e-57 224.9 112 100.0
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 7.9e-37 157.5 115 68.7
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 6.7e-36 154.5 112 69.6
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.4e-33 146.7 116 66.4
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 5.3e-33 144.8 111 61.3
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 6.9e-33 144.4 111 62.2
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 2.6e-32 142.5 112 66.1
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 9.9e-32 140.6 108 61.1
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.2e-31 139.4 117 60.7
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 3.8e-31 138.7 110 60.9
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 6.4e-31 137.9 117 59.8
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.9e-30 136.3 117 59.8
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 1.9e-30 136.3 105 61.9
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.2e-30 135.6 117 59.0
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 5.5e-30 134.8 108 62.0
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 9.3e-30 134.0 111 58.6
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 1.6e-29 133.3 109 59.6
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 2.7e-29 132.5 121 58.7
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 3.9e-28 128.6 111 58.6
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 6.7e-28 127.9 112 61.6
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 1.1e-27 127.1 112 60.7
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 7.4e-27 124.4 108 58.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.3e-26 123.6 106 60.4
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.1e-26 122.9 102 58.8
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.1e-25 120.6 104 58.7
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 1.4e-25 120.2 120 55.0
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 4.0e-25 118.6 109 55.0
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 5.3e-25 118.2 109 55.0
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 5.3e-25 118.2 116 60.3
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 5.3e-25 118.2 114 53.5
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.0e-24 116.3 98 58.2
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 3.4e-24 115.5 108 54.6
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 7.6e-24 114.4 129 49.6
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.6e-24 114.4 118 54.2
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.6e-24 114.4 118 54.2
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.6e-24 114.4 118 54.2
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.3e-23 113.6 118 54.2
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 1.7e-23 113.2 116 56.9
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 2.2e-23 112.8 108 56.5
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.2e-23 112.8 118 53.4
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.2e-23 112.8 118 53.4
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 2.9e-23 112.5 105 54.3
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 4.9e-23 111.7 111 50.5
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.1e-22 110.5 105 53.3
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 1.4e-22 110.2 111 52.3
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.5e-22 109.4 118 52.5
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 5.5e-22 108.2 115 48.7
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 5.5e-22 108.2 117 52.1
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-21 107.1 118 51.7
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.2e-21 107.1 107 57.0
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.2e-21 107.1 112 49.1
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 2.1e-21 106.3 82 62.2
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 2.1e-21 106.3 116 52.6
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 2.1e-21 106.3 74 66.2
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.1e-21 106.3 112 53.6
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 7.9e-21 104.4 122 47.5
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 1.0e-20 104.0 119 47.9
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 1.0e-20 104.0 88 55.7
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.3e-20 103.6 118 49.2
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.3e-20 102.8 118 49.2
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.3e-20 102.8 118 49.2
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.3e-20 102.8 111 48.6
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 2.3e-20 102.8 116 47.4
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 4.3e-19 98.6 114 46.5
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 5.7e-19 98.2 88 58.0
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 1.3e-18 97.1 114 47.4
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 2.2e-18 96.3 121 47.1
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 2.8e-18 95.9 111 46.8
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 6.3e-18 94.7 82 58.5
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 6.3e-18 94.7 115 47.0
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.1e-17 94.0 114 47.4
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 2.4e-17 92.8 83 49.4
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 3.1e-17 92.4 122 46.7
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 3.1e-17 92.4 123 44.7
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.2e-16 90.5 122 45.1
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 1.5e-16 90.1 83 49.4
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 2.0e-16 89.7 121 46.3
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 2.6e-16 89.4 122 45.1
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 3.4e-16 89.0 120 42.5
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 3.4e-16 89.0 120 42.5
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 3.4e-16 89.0 120 42.5
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 5.9e-16 88.2 120 41.7
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 5.9e-16 88.2 120 42.5
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 5.9e-16 88.2 108 42.6
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 7.6e-16 87.8 120 41.7
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.7e-15 86.7 121 39.7
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 2.9e-15 85.9 73 56.2
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.9e-15 85.9 121 41.3
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 5.0e-15 85.1 121 43.0
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 6.5e-15 84.7 122 42.6
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 4.2e-14 82.0 122 37.7
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 1.2e-13 80.5 103 40.8
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 1.2e-13 80.5 84 44.0
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 2.1e-13 79.7 69 55.1
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 2.7e-13 79.3 114 39.5
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 4.6e-13 78.6 68 58.8
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 7.9e-13 77.8 90 44.4
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 1.4e-12 77.0 111 39.6
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 2.3e-12 76.3 55 52.7
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 3.3e-11 72.4 116 39.7
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 3.4e-08 62.4 70 38.6
Nn1g07227 Nelumbo nucifera HOM05D002014 ORTHO05D001958 7.7e-08 61.2 120 39.2
Nn5g28113 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.9e-07 59.3 95 40.0
Lj6C73T1 Lonicera japonica HOM05D002014 ORTHO05D001958 6.5e-07 58.2 109 37.6
Dinv13928 Davidia involucrata HOM05D002014 ORTHO05D001958 1.1e-06 57.4 117 33.3
Lj6C9T0 Lonicera japonica HOM05D002014 ORTHO05D001958 1.1e-06 57.4 109 37.6
Sabra10G0176000 Salix brachista HOM05D002014 ORTHO05D001958 1.1e-06 57.4 112 39.3
Sabra10G0176400 Salix brachista HOM05D002014 ORTHO05D001958 1.1e-06 57.4 112 39.3
PGSC0003DMG400016438 Solanum tuberosum HOM05D002014 ORTHO05D001958 1.1e-06 57.4 77 42.9
Cpa.g.sc12.271 Carica papaya HOM05D002014 ORTHO05D001958 1.9e-06 56.6 106 34.9
Oeu016058.1 Olea europaea HOM05D002014 ORTHO05D001958 1.9e-06 56.6 113 33.6
TWI38G1116 Tripterygium wilfordii HOM05D002014 ORTHO05D001958 1.9e-06 56.6 113 35.4
Nn5g28102 Nelumbo nucifera HOM05D002014 ORTHO05D001958 2.5e-06 56.2 101 38.6
Solyc02g036180.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 2.5e-06 56.2 95 31.6
Lsat_1_v5_gn_7_15460 Lactuca sativa HOM05D002014 ORTHO05D001958 3.2e-06 55.8 106 34.0
CAN.G1014.30 Capsicum annuum HOM05D002014 ORTHO05D001958 4.2e-06 55.5 78 41.0
Lj6C71T2 Lonicera japonica HOM05D002014 ORTHO05D001958 4.2e-06 55.5 94 38.3
Lj6C72G5 Lonicera japonica HOM05D002014 ORTHO05D001958 4.2e-06 55.5 99 38.4
Lj6C74T0 Lonicera japonica HOM05D002014 ORTHO05D001958 4.2e-06 55.5 94 38.3
Potri.011G008932 Populus trichocarpa HOM05D002014 ORTHO05D001958 4.2e-06 55.5 119 33.6
TAR626G0649 Trochodendron aralioides HOM05D002014 ORTHO05D001958 5.5e-06 55.1 68 39.7
Lsat_1_v5_gn_7_15400 Lactuca sativa HOM05D002014 ORTHO05D001958 7.2e-06 54.7 108 31.5
Potri.004G007100 Populus trichocarpa HOM05D002014 ORTHO05D001958 7.2e-06 54.7 125 33.6
PGSC0003DMG400021488 Solanum tuberosum HOM05D002014 ORTHO05D001958 7.2e-06 54.7 96 30.2
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 9.4e-06 54.3 63 39.7
QL05p072432 Quercus lobata HOM05D002014 ORTHO05D001958 9.4e-06 54.3 109 33.0
QL12p029974 Quercus lobata HOM05D002014 ORTHO05D001958 9.4e-06 54.3 109 33.0
RcHm_v2.0_Chr5g0002461 Rosa chinensis HOM05D002014 ORTHO05D001958 9.4e-06 54.3 84 38.1
SalBow8G4319 Salvia bowleyana HOM05D002014 ORTHO05D001958 9.4e-06 54.3 68 45.6


User provided reference genes

Program Settings