Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 2.4e-122 442.2 230 100.0
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 7.9e-113 410.6 230 89.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 2.0e-84 316.2 230 69.1
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 7.2e-82 307.8 235 69.8
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.4e-80 303.5 242 64.5
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 2.6e-79 299.3 237 66.2
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.3e-78 297.0 238 67.2
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 1.3e-78 297.0 233 62.7
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.7e-78 296.6 236 66.9
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 2.2e-78 296.2 236 66.9
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.8e-78 295.8 222 65.8
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.4e-77 292.7 236 66.1
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.4e-77 292.7 227 67.8
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 3.1e-77 292.4 230 66.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.6e-76 290.0 229 65.9
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.6e-76 290.0 233 61.8
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.0e-76 289.7 230 65.2
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 2.7e-76 289.3 232 64.7
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 4.5e-76 288.5 244 61.5
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 4.5e-76 288.5 229 62.0
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.5e-76 288.5 229 65.9
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.0e-75 287.3 227 62.6
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.3e-75 287.0 230 64.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.3e-75 287.0 228 64.9
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.7e-75 286.6 222 65.3
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 3.8e-75 285.4 232 62.5
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.9e-74 283.1 232 61.6
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.5e-74 282.7 232 66.4
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.2e-74 282.3 230 60.4
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 3.2e-74 282.3 230 62.6
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 4.2e-74 282.0 239 63.6
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 7.2e-74 281.2 233 62.2
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 7.2e-74 281.2 239 63.6
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.2e-73 280.4 237 61.6
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.6e-73 280.0 231 61.0
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.6e-73 280.0 233 61.4
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 4.7e-73 278.5 238 63.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 1.0e-72 277.3 233 61.8
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.4e-72 276.9 237 62.4
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.4e-72 276.9 248 58.9
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.8e-72 276.6 222 64.0
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.3e-72 276.2 247 60.7
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 6.8e-72 274.6 241 60.6
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 8.8e-72 274.2 245 60.0
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.2e-71 273.9 239 61.5
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.5e-71 273.5 230 63.0
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.0e-71 273.1 226 63.3
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 3.4e-71 272.3 259 58.3
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 4.4e-71 271.9 241 60.2
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 4.4e-71 271.9 238 60.9
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 4.4e-71 271.9 237 62.9
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 5.7e-71 271.6 230 65.2
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 5.7e-71 271.6 241 61.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 2.2e-70 269.6 235 63.0
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.8e-70 268.5 218 61.9
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.8e-70 268.5 238 57.6
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 8.3e-70 267.7 239 58.6
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.1e-69 267.3 242 58.7
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.4e-69 266.9 238 60.1
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 3.1e-69 265.8 237 59.9
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.1e-69 265.8 237 57.4
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 4.1e-69 265.4 242 58.3
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 7.0e-69 264.6 243 58.0
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 9.1e-69 264.2 242 58.3
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 9.1e-69 264.2 242 58.7
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.6e-68 263.5 241 58.5
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.0e-68 263.1 239 58.2
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 2.7e-68 262.7 242 59.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.5e-68 262.3 221 62.0
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 4.5e-68 261.9 243 57.6
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.0e-67 260.8 236 59.7
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 3.8e-67 258.8 241 57.3
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 8.6e-67 257.7 241 57.3
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.5e-66 256.9 221 59.7
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.9e-66 256.5 230 57.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 4.2e-66 255.4 243 57.2
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.2e-65 253.8 237 59.9
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.6e-65 252.3 220 60.0
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 8.0e-65 251.1 229 56.3
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.4e-64 250.4 257 52.9
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 4.0e-64 248.8 351 44.7
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 6.8e-64 248.1 240 58.3
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.5e-63 246.9 223 59.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 4.4e-63 245.4 257 53.3
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 1.7e-62 243.4 249 51.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.7e-62 242.3 252 55.2
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.0e-60 236.5 258 54.3
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.3e-59 233.8 239 52.7
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.5e-58 229.6 221 56.1
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.2e-57 227.3 257 51.4
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.4e-56 223.8 233 54.5
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 6.8e-56 221.5 189 63.0
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 3.4e-55 219.2 242 52.1
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 7.0e-53 211.5 226 54.9
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 7.0e-53 211.5 191 57.1
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.2e-52 210.7 222 50.5
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 6.0e-52 208.4 222 50.5
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-51 206.8 216 49.5
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.3e-50 202.2 232 47.0
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 4.7e-49 198.7 234 51.3
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.4e-48 197.2 223 48.4
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 7.5e-47 191.4 239 43.5
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-46 190.3 225 48.0
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 1.7e-46 190.3 225 48.0
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.1e-44 183.3 233 44.2
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.1e-44 183.3 165 53.9
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 3.9e-43 179.1 105 82.9
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.5e-42 177.2 165 52.7
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.5e-42 177.2 165 52.7
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.5e-42 177.2 235 45.1
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.5e-42 176.4 195 48.7
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 6.4e-38 161.8 217 39.2
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.7e-35 153.7 138 60.9
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 3.1e-32 142.9 133 57.9
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.4e-31 139.4 221 43.4
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.7e-30 137.1 219 34.2
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 6.0e-28 128.6 225 34.2
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 1.7e-27 127.1 233 36.9
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 5.1e-27 125.6 125 56.8
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.3e-22 110.9 225 33.3
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 5.4e-21 105.5 88 58.0
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 5.4e-21 105.5 171 35.7
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 9.3e-21 104.8 106 54.7
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.1e-18 97.8 130 46.2
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 9.6e-18 94.7 146 39.0
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 9.0e-16 88.2 122 41.0
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 9.0e-16 88.2 122 41.0
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-15 87.8 122 41.8
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.2e-15 87.8 122 41.8
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 3.4e-15 86.3 122 40.2
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 8.4e-14 81.6 127 36.2
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 1.9e-13 80.5 201 35.3
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 9.3e-13 78.2 45 64.4
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 3.3e-10 69.7 153 34.0
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-07 61.2 84 42.9
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-07 60.5 57 54.4
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 1.7e-06 57.4 35 74.3
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 2.2e-06 57.0 280 24.6
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 8.4e-06 55.1 72 43.1


User provided reference genes

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