Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 5.2e-218 760.8 382 100.0
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 9.2e-175 617.1 386 82.1
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 3.5e-158 562.0 384 76.3
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 6.2e-155 551.2 387 74.2
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.9e-152 542.3 387 73.6
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 1.6e-139 500.0 382 68.1
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 2.9e-136 489.2 325 75.4
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.1e-134 483.0 345 73.0
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 2.7e-134 482.6 357 70.3
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.3e-133 480.3 346 72.5
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 9.7e-132 474.2 371 67.7
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.3e-131 473.8 390 67.7
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 8.2e-131 471.1 301 77.7
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.0e-129 466.5 336 68.8
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 2.0e-129 466.5 336 68.8
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 5.9e-129 464.9 390 64.1
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 7.9e-126 454.5 374 63.6
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 3.9e-125 452.2 382 62.3
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 7.4e-124 448.0 322 70.5
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 1.3e-123 447.2 306 71.9
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 1.7e-123 446.8 357 65.0
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 4.8e-123 445.3 333 67.9
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 2.4e-122 443.0 338 68.9
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 4.1e-122 442.2 373 62.7
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 2.9e-120 436.0 413 58.4
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 5.0e-120 435.3 386 60.6
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 5.5e-119 431.8 374 61.8
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 1.2e-118 430.6 333 67.9
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 6.1e-118 428.3 309 69.3
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 3.0e-117 426.0 329 65.3
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 3.9e-117 425.6 330 67.6
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 2.0e-116 423.3 378 59.5
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 4.4e-116 422.2 329 66.0
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 7.4e-116 421.4 299 70.6
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 3.7e-115 419.1 354 63.3
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 8.2e-115 417.9 310 69.7
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 1.1e-114 417.5 382 59.2
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 1.4e-114 417.2 382 58.6
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 1.8e-114 416.8 368 59.8
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 7.7e-113 411.4 349 59.3
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 1.3e-112 410.6 372 58.9
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 2.2e-112 409.8 388 57.0
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 2.2e-112 409.8 330 62.4
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 5.0e-112 408.7 367 58.6
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 3.2e-111 406.0 386 58.3
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 3.2e-111 406.0 360 58.6
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 4.2e-111 405.6 373 58.7
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 2.1e-110 403.3 371 59.0
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 3.6e-110 402.5 326 62.9
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 1.0e-109 401.0 330 62.7
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 2.3e-109 399.8 384 55.7
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 1.5e-108 397.1 352 59.4
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.0e-108 396.7 357 58.3
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 2.0e-108 396.7 332 63.3
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 2.6e-108 396.4 364 58.0
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 5.7e-108 395.2 357 58.5
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.7e-107 393.7 360 57.2
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.2e-107 393.3 398 53.8
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 3.1e-106 389.4 345 58.6
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 5.3e-106 388.7 311 62.7
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 5.3e-106 388.7 311 62.7
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 7.0e-106 388.3 365 56.7
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 7.0e-106 388.3 379 54.9
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 1.6e-105 387.1 332 60.5
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 5.9e-105 385.2 347 57.3
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 5.9e-105 385.2 325 62.5
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 1.0e-104 384.4 357 58.0
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 1.7e-104 383.6 366 56.6
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 2.2e-104 383.3 352 58.8
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 6.5e-104 381.7 367 57.5
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 1.5e-103 380.6 360 58.9
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 3.2e-103 379.4 370 56.5
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 4.2e-103 379.0 390 53.3
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 9.4e-103 377.9 382 55.2
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 2.1e-102 376.7 386 53.9
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 1.8e-101 373.6 376 55.1
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 2.6e-100 369.8 280 66.1
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 3.4e-100 369.4 361 54.6
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 3.4e-100 369.4 292 62.3
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 1.3e-99 367.5 354 54.2
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 2.2e-99 366.7 373 55.0
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 1.1e-98 364.4 384 53.9
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 1.4e-98 364.0 330 58.5
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 3.1e-98 362.8 374 53.2
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 5.4e-98 362.1 376 52.9
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 1.2e-97 360.9 234 76.5
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 4.5e-97 359.0 338 55.6
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 7.7e-97 358.2 295 63.1
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 6.5e-96 355.1 303 61.7
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 2.5e-95 353.2 324 58.0
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 9.4e-95 351.3 330 57.0
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 3.4e-92 342.8 298 61.1
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 3.7e-91 339.3 236 71.2
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 1.2e-89 334.3 358 48.9
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 2.9e-83 313.2 357 49.3
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 1.2e-78 297.7 328 49.4
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 4.7e-78 295.8 226 66.8
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 8.0e-78 295.0 220 67.3
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 2.4e-74 283.5 353 44.8
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 5.8e-68 262.3 189 73.0
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 3.7e-67 259.6 365 40.5
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 2.5e-63 246.9 177 68.9
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 2.4e-58 230.3 283 49.8
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 4.3e-55 219.5 215 54.9
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 1.0e-48 198.4 215 47.0
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-47 194.9 263 42.2
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 3.3e-47 193.4 314 36.9
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 5.6e-47 192.6 196 51.5
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 9.6e-47 191.8 293 39.2
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-45 188.3 293 40.3
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 1.4e-45 188.0 190 54.7
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 9.0e-45 185.3 187 55.1
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-44 184.9 283 41.0
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 2.6e-44 183.7 320 35.3
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 3.8e-43 179.9 149 65.1
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 3.2e-42 176.8 332 33.4
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 7.1e-42 175.6 293 37.2
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-38 163.7 149 54.4
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 6.2e-38 162.5 251 39.0
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 4.0e-37 159.8 247 36.8
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.4e-36 156.8 136 56.6
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 9.6e-31 138.7 223 35.0
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 4.9e-27 126.3 192 40.6
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 8.4e-27 125.6 105 58.1
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.2e-19 100.9 205 30.2
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 4.2e-18 96.7 113 49.6
Actinidia09700 Actinidia chinensis HOM05D006259 ORTHO05D053169 1.8e-08 64.7 61 55.7
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.1e-07 62.0 52 55.8
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.5e-07 61.6 48 60.4


User provided reference genes

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