Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.4e-125 453.0 235 100.0
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.8e-88 329.7 207 86.0
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 7.6e-87 324.3 225 80.9
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 8.4e-78 294.3 225 76.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.9e-74 283.1 228 73.2
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.5e-74 282.7 228 72.4
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.7e-74 281.6 228 72.8
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.4e-72 276.9 228 73.2
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.8e-70 268.9 226 70.8
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 6.5e-70 268.1 215 71.6
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.3e-67 260.4 227 67.8
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 2.6e-63 246.1 230 65.2
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.2e-61 238.8 218 66.5
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.2e-60 237.3 225 61.8
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 4.6e-60 235.3 225 64.4
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 6.1e-60 235.0 227 62.1
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 7.9e-60 234.6 199 68.8
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 2.3e-59 233.0 228 65.4
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 2.5e-58 229.6 228 61.8
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 9.7e-58 227.6 222 64.9
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 1.1e-56 224.2 199 66.8
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 5.3e-56 221.9 231 60.6
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 9.1e-56 221.1 229 61.6
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.2e-55 220.7 230 61.3
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 3.4e-55 219.2 227 61.2
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 2.2e-54 216.5 229 60.7
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.9e-54 216.1 217 61.3
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 5.0e-54 215.3 229 60.7
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.1e-53 214.2 228 60.5
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.9e-53 213.4 218 61.0
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 1.9e-53 213.4 214 58.4
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 9.4e-53 211.1 229 60.7
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 4.7e-52 208.8 221 61.5
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 4.7e-52 208.8 203 63.1
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 6.1e-52 208.4 197 66.0
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 7.9e-52 208.0 190 64.7
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 3.0e-51 206.1 239 55.2
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 3.0e-51 206.1 221 58.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 3.0e-51 206.1 233 60.1
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 5.1e-51 205.3 223 60.1
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 8.8e-51 204.5 190 64.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 2.0e-50 203.4 214 57.0
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.0e-50 203.4 225 56.9
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.3e-50 202.6 228 60.1
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 4.4e-50 202.2 228 58.3
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.4e-50 202.2 228 60.1
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 7.4e-50 201.4 219 58.9
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.3e-49 200.7 228 59.6
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.2e-49 199.9 218 58.7
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.8e-48 196.8 212 59.9
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.4e-48 196.4 220 58.2
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 3.1e-48 196.1 226 56.6
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 5.3e-48 195.3 230 60.0
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 9.1e-48 194.5 135 78.5
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 2.0e-47 193.4 160 69.4
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 3.5e-47 192.6 216 56.0
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 5.9e-47 191.8 229 55.9
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 5.9e-47 191.8 212 59.9
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 2.2e-46 189.9 228 54.8
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 2.2e-46 189.9 217 54.8
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 5.0e-46 188.7 217 56.7
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 6.5e-46 188.3 214 60.7
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.1e-45 187.6 189 60.3
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 5.5e-45 185.3 226 52.2
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 9.4e-45 184.5 242 53.3
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.2e-44 184.1 145 69.0
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 2.1e-44 183.3 218 55.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.6e-44 182.6 215 54.0
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.6e-44 182.6 226 51.8
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.6e-44 182.6 226 51.8
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.6e-44 182.6 211 55.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 3.6e-44 182.6 203 61.6
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 4.7e-44 182.2 207 53.6
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 8.0e-44 181.4 226 51.3
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.0e-43 179.5 201 58.2
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 5.2e-43 178.7 200 58.5
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 8.8e-43 177.9 236 50.8
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 3.3e-42 176.0 193 60.1
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 4.4e-42 175.6 214 53.3
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 2.2e-41 173.3 136 70.6
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.4e-40 170.6 211 55.5
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.4e-40 170.6 211 55.5
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 2.4e-40 169.9 205 53.2
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 3.1e-40 169.5 209 51.7
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.2e-39 167.5 146 65.8
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 3.5e-39 166.0 219 53.4
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.0e-38 164.5 176 56.2
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 3.8e-38 162.5 217 51.2
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.5e-37 160.6 219 53.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 2.5e-37 159.8 185 56.8
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 7.2e-37 158.3 175 57.7
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 7.2e-37 158.3 145 60.7
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 7.2e-37 158.3 145 60.7
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 7.5e-34 148.3 171 56.7
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.2e-33 146.7 224 48.7
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.7e-33 146.0 224 48.2
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.8e-32 143.7 186 53.8
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 7.0e-32 141.7 122 65.6
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.6e-31 140.6 223 48.4
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 1.7e-30 137.1 142 62.7
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.9e-30 136.3 221 44.3
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.5e-29 134.0 136 60.3
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 2.1e-28 130.2 102 68.6
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 3.6e-28 129.4 235 46.8
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 8.8e-27 124.8 171 49.7
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 8.8e-27 124.8 171 49.7
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 1.2e-26 124.4 133 58.6
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 5.7e-26 122.1 89 71.9
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 7.5e-26 121.7 134 51.5
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.2e-25 120.2 134 50.7
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 1.1e-24 117.9 159 52.8
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 4.1e-24 115.9 140 55.7
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.6e-23 114.0 211 41.7
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.5e-23 112.8 204 43.1
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 3.8e-22 109.4 138 52.2
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.5e-21 107.5 137 54.7
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 2.5e-21 106.7 161 44.7
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.8e-19 100.5 198 39.4
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.3e-19 100.1 74 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 2.2e-17 93.6 174 37.9
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.8e-16 90.5 71 71.8
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 3.5e-15 86.3 72 66.7
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 3.0e-14 83.2 146 41.1
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 4.3e-13 79.3 60 71.7
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 4.7e-12 75.9 118 44.9
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 5.2e-11 72.4 139 37.4
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 4.4e-10 69.3 44 77.3
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 7.5e-10 68.6 81 50.6
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.9e-08 63.9 64 56.2
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 3.2e-08 63.2 133 38.3
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.0e-06 56.6 67 52.2
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 5.0e-06 55.8 34 79.4


User provided reference genes

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