Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 5.5e-294 1013.4 473 100.0
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.0e-259 898.7 459 90.2
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.1e-257 891.3 466 88.2
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.5e-255 883.6 454 88.8
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 9.2e-249 863.2 483 83.2
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.9e-247 858.2 453 84.5
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 1.4e-244 849.4 467 83.1
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.4e-244 849.4 457 83.8
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.4e-243 844.3 447 85.5
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 5.7e-243 844.0 444 85.4
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.7e-242 841.3 453 84.5
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 6.4e-242 840.5 474 81.6
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 8.3e-242 840.1 448 83.5
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 2.4e-241 838.6 480 79.2
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.2e-240 836.3 464 82.3
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.2e-240 836.3 448 83.3
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.2e-240 836.3 448 83.0
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 2.0e-240 835.5 455 82.9
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 3.5e-240 834.7 450 83.1
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 4.6e-240 834.3 491 79.0
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 5.9e-240 833.9 455 82.4
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.0e-239 833.2 443 84.4
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 1.0e-239 833.2 455 82.2
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 3.9e-239 831.2 454 82.8
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 6.6e-239 830.5 445 84.5
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 4.3e-238 827.8 449 82.4
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 7.3e-238 827.0 457 81.8
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 7.3e-238 827.0 446 83.6
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 9.5e-238 826.6 463 81.9
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 3.6e-237 824.7 462 81.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 3.6e-237 824.7 450 82.2
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 1.4e-236 822.8 452 81.0
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 3.1e-236 821.6 448 83.5
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.0e-236 821.2 439 84.1
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 8.9e-236 820.1 460 80.9
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 5.8e-235 817.4 459 80.6
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 5.8e-235 817.4 450 81.6
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 7.5e-235 817.0 456 81.1
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.3e-234 816.2 459 80.8
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.1e-233 813.1 467 79.0
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.1e-233 813.1 458 80.6
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.4e-233 812.0 456 80.7
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.1e-233 811.2 457 80.7
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 9.2e-233 810.1 454 80.4
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 1.2e-232 809.7 457 81.0
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 2.7e-232 808.5 451 80.9
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.3e-231 806.2 447 80.5
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 2.3e-231 805.4 486 75.9
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 2.3e-231 805.4 486 75.9
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 3.0e-231 805.1 438 82.0
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.0e-231 805.1 458 78.2
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 6.6e-231 803.9 489 75.7
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.1e-230 803.1 435 82.5
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.2e-229 799.7 441 80.5
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 3.6e-229 798.1 436 82.3
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 4.7e-229 797.7 441 81.4
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 6.2e-229 797.3 450 80.2
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 8.1e-229 797.0 432 82.4
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.4e-228 796.2 433 82.2
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.8e-228 795.8 451 79.2
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 2.3e-228 795.4 449 79.5
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 2.3e-228 795.4 449 79.3
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 5.2e-228 794.3 434 81.6
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 5.2e-228 794.3 434 81.6
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 5.2e-228 794.3 469 79.3
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 8.9e-228 793.5 449 80.0
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 8.9e-228 793.5 458 77.3
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.6e-227 792.0 434 80.6
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 5.8e-227 790.8 439 79.7
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.7e-226 789.3 435 80.7
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.7e-226 789.3 457 78.3
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.2e-226 788.9 451 78.7
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 2.2e-226 788.9 438 80.8
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 4.9e-226 787.7 451 78.5
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 4.9e-226 787.7 437 80.3
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 4.9e-226 787.7 444 79.5
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.4e-225 786.2 437 81.5
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 7.1e-225 783.9 432 81.7
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 7.1e-225 783.9 432 81.7
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.2e-224 783.1 442 79.0
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 7.8e-224 780.4 432 80.6
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.7e-223 779.2 458 79.7
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.5e-222 775.4 476 76.1
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.3e-220 768.8 445 77.3
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 4.9e-218 761.1 445 76.4
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 8.4e-218 760.4 495 72.1
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.3e-215 753.1 451 75.4
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.1e-214 750.0 439 77.4
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 7.6e-211 737.3 447 74.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.4e-209 733.0 454 73.6
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 9.3e-209 730.3 392 84.7
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 6.2e-205 717.6 443 74.7
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.1e-204 716.8 378 84.9
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.2e-200 703.4 447 72.0
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 2.7e-200 702.2 407 77.4
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.7e-194 682.9 454 69.6
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 9.3e-193 677.2 450 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.0e-191 673.7 428 71.0
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 3.4e-187 658.7 450 68.7
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 7.6e-187 657.5 422 73.0
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.1e-182 643.7 335 86.9
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 2.2e-178 629.4 437 66.4
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.1e-172 608.6 302 89.4
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.0e-170 604.0 299 91.0
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 8.8e-167 590.9 308 84.4
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 1.5e-166 590.1 452 62.4
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.6e-158 562.8 469 58.8
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.2e-155 553.9 376 69.9
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 3.6e-128 462.6 271 76.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 2.1e-91 340.5 181 89.5
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.4e-84 317.8 196 76.5
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-72 278.1 132 92.4
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 7.6e-70 268.9 234 55.6
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 8.4e-69 265.4 196 62.2
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 5.5e-68 262.7 379 42.7
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 7.9e-67 258.8 133 84.2
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.7e-64 250.0 120 91.7
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 9.0e-63 245.4 216 59.3
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 5.1e-58 229.6 133 78.9
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 2.8e-56 223.8 132 75.0
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.0e-50 205.3 119 77.3
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.4e-47 194.9 116 74.1
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 6.5e-45 186.0 249 47.0
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.0e-33 147.9 88 72.7
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.5e-30 136.7 105 62.9
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.3e-24 118.6 72 69.4
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.3e-24 118.6 55 92.7
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 5.4e-23 113.2 181 37.6
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 2.7e-22 110.9 61 75.4
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.3e-20 104.0 105 54.3
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 2.0e-14 84.7 68 58.8
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 5.8e-09 66.6 43 69.8
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.7e-08 63.9 64 54.7


User provided reference genes

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