Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 1.6e-269 932.2 475 100.0
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 8.4e-226 786.9 465 88.0
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 1.7e-181 639.8 479 69.9
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 1.4e-180 636.7 477 70.4
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 2.4e-180 636.0 451 72.9
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 3.2e-177 625.5 475 67.8
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 8.8e-175 617.5 474 68.8
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 8.8e-175 617.5 475 69.3
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 1.5e-174 616.7 475 68.4
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 3.1e-172 609.0 444 69.1
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 3.1e-172 609.0 429 71.8
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 1.6e-171 606.7 471 68.6
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 2.0e-171 606.3 470 67.9
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 3.5e-171 605.5 465 68.4
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 7.2e-169 597.8 428 71.0
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 4.7e-168 595.1 426 70.2
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 2.0e-166 589.7 426 70.0
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 6.3e-165 584.7 428 69.9
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 9.1e-164 580.9 434 68.4
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 1.6e-163 580.1 446 66.8
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 1.6e-160 570.1 460 63.9
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 1.0e-159 567.4 454 64.8
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 5.2e-159 565.1 425 67.8
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 1.2e-158 563.9 427 67.4
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 1.2e-158 563.9 457 64.8
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 2.6e-158 562.8 444 64.6
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 7.5e-158 561.2 452 65.0
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 1.5e-153 547.0 461 63.3
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 1.3e-146 523.9 382 70.9
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 7.0e-140 501.5 374 67.4
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 3.0e-138 496.1 461 60.3
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 1.6e-136 490.3 346 74.9
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 8.0e-136 488.0 434 59.7
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.5e-134 483.8 424 58.7
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 1.6e-128 463.8 437 57.4
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 4.7e-128 462.2 421 56.5
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.9e-124 450.3 341 66.3
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 7.1e-124 448.4 444 53.2
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 1.2e-123 447.6 473 53.3
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 1.6e-123 447.2 427 56.7
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 4.6e-115 419.1 418 57.4
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 8.4e-109 398.3 362 64.1
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 1.9e-92 344.0 259 68.7
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 9.3e-92 341.7 428 46.3
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 6.0e-91 339.0 432 44.7
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 1.0e-85 321.6 286 59.1
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 1.3e-80 304.7 205 76.1
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 7.6e-78 295.4 234 70.1
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 1.4e-71 274.6 222 68.5
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 8.0e-59 232.3 187 63.1
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 1.1e-57 228.4 175 67.4
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 4.4e-57 226.5 169 71.0
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 5.3e-55 219.5 181 64.6
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 1.0e-53 215.3 273 46.5
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 2.3e-50 204.1 158 65.8
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.8e-42 177.9 149 61.1
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 2.0e-33 147.9 143 53.1
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 4.0e-26 123.6 269 37.9
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 4.1e-15 87.0 101 39.6
RcHm_v2.0_Chr5g0030641 Rosa chinensis HOM05D008293 ORTHO05D010504 4.1e-15 87.0 67 67.2
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 2.6e-09 67.8 85 45.9
SEGI_40959 Sequoiadendron giganteum HOM05D008293 ORTHO05D386060 9.9e-09 65.9 75 46.7


User provided reference genes

Program Settings