Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 0.0e+00 1122.1 572 100.0
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 4.3e-301 1037.3 575 92.0
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 3.2e-296 1021.1 578 90.8
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.2e-284 980.3 572 84.4
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 6.2e-284 980.3 574 84.7
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.4e-283 979.2 572 84.4
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 8.4e-281 969.9 576 84.9
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.3e-278 962.6 580 82.6
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.0e-275 951.0 584 81.0
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 9.9e-274 946.4 578 81.1
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 6.4e-273 943.7 578 80.6
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 3.5e-271 937.9 573 82.0
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 4.6e-271 937.6 575 80.5
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 1.3e-270 936.0 580 79.3
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 5.1e-270 934.1 543 83.4
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 5.1e-270 934.1 572 79.9
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.1e-269 932.9 579 79.3
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 1.9e-269 932.2 573 79.8
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 1.9e-269 932.2 573 79.9
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 3.3e-269 931.4 573 79.6
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 4.8e-268 927.5 572 79.7
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.8e-267 925.6 573 79.2
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.7e-265 919.1 603 76.5
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 2.2e-265 918.7 571 78.3
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.9e-265 918.3 578 80.1
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 4.9e-265 917.5 571 78.3
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 6.5e-265 917.1 572 77.4
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 2.5e-264 915.2 573 78.4
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 3.2e-264 914.8 571 79.0
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 2.7e-263 911.8 569 78.0
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 4.6e-263 911.0 572 77.4
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.1e-261 906.4 571 77.1
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.1e-261 906.4 572 76.7
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 1.5e-261 906.0 574 77.7
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 2.5e-261 905.2 571 77.8
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.5e-261 905.2 573 77.3
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 3.7e-260 901.4 570 76.7
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 4.8e-260 901.0 572 76.7
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 6.3e-260 900.6 572 77.4
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 8.2e-260 900.2 569 80.1
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 2.4e-259 898.7 573 77.3
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 3.1e-259 898.3 573 78.7
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 3.1e-259 898.3 570 78.6
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 5.3e-259 897.5 572 77.6
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.2e-258 896.3 528 82.2
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 1.5e-258 896.0 574 76.8
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.0e-257 893.3 567 76.9
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 5.0e-257 891.0 570 77.7
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.4e-256 889.4 575 76.5
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 4.2e-256 887.9 514 82.9
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 3.6e-255 884.8 569 76.3
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 4.6e-255 884.4 573 75.0
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 6.1e-255 884.0 569 74.9
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 6.1e-255 884.0 579 75.8
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 3.0e-254 881.7 529 80.9
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 3.9e-254 881.3 570 74.9
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 1.9e-253 879.0 569 75.2
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 4.3e-253 877.9 533 79.5
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 4.3e-253 877.9 578 75.6
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 5.7e-253 877.5 569 74.9
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 5.7e-253 877.5 571 74.6
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 5.7e-253 877.5 570 74.6
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 7.4e-253 877.1 578 75.4
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 9.7e-253 876.7 569 74.7
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 9.7e-253 876.7 569 74.7
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.3e-252 876.3 569 74.7
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 1.3e-252 876.3 570 74.9
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 1.7e-252 875.9 573 74.9
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 2.8e-252 875.2 569 74.9
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 2.8e-252 875.2 570 74.6
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 3.7e-252 874.8 569 75.2
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 3.7e-252 874.8 571 74.6
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 5.3e-251 870.9 569 74.7
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 5.3e-251 870.9 569 74.7
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 6.9e-251 870.5 564 74.3
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 6.9e-251 870.5 572 73.6
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 2.6e-250 868.6 570 74.7
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.3e-249 866.3 544 76.3
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 2.9e-249 865.1 624 71.0
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 8.5e-249 863.6 568 73.4
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 2.5e-248 862.1 532 81.4
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 4.2e-248 861.3 575 73.4
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 6.1e-247 857.4 571 72.9
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 7.9e-247 857.1 539 76.4
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.6e-245 852.0 514 78.6
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 5.7e-245 850.9 594 69.7
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.4e-243 846.3 560 74.6
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 3.1e-243 845.1 573 72.6
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 7.0e-243 844.0 570 72.8
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 2.7e-239 832.0 573 70.9
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 1.4e-238 829.7 571 71.6
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 2.3e-238 828.9 592 70.4
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 5.2e-238 827.8 659 67.7
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 5.3e-235 817.8 571 71.8
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 9.1e-235 817.0 560 72.0
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 5.2e-230 801.2 530 72.6
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 4.8e-228 794.7 571 67.8
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 1.2e-226 790.0 534 71.9
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 7.2e-216 754.2 448 81.7
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.6e-215 753.1 499 74.1
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 1.0e-209 733.8 578 64.4
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 2.1e-207 726.1 572 64.9
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.4e-203 712.6 408 83.6
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 3.2e-203 712.2 436 78.4
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 2.8e-199 699.1 435 78.2
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 4.9e-196 688.3 439 76.5
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 3.0e-185 652.5 433 76.2
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 1.8e-182 643.3 429 76.0
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.9e-179 633.3 541 58.2
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 5.3e-174 615.1 437 72.1
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 5.3e-158 562.0 436 66.1
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 6.2e-151 538.5 372 74.7
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 3.1e-150 536.2 545 51.9
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 3.2e-147 526.2 536 52.4
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 7.1e-147 525.0 534 52.2
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 5.5e-123 445.7 582 41.9
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 1.5e-120 437.6 380 61.1
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 1.3e-95 354.8 215 84.7
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-93 347.8 222 72.1
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.7e-92 344.4 280 67.1
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 4.7e-90 336.3 586 39.6
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 4.7e-90 336.3 387 50.9
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 3.3e-83 313.5 223 65.9
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 5.4e-70 269.6 605 32.7
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 2.1e-69 267.7 537 34.5
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.3e-59 233.8 148 79.7
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 7.3e-59 232.6 151 76.8
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 2.4e-57 227.6 507 33.9
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.7e-55 221.5 139 79.9
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 2.6e-48 197.6 126 73.0
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 4.2e-46 190.3 103 81.6
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 8.1e-42 176.0 106 82.1
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 1.2e-40 172.2 199 54.8
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 8.5e-23 112.8 90 62.2
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.6e-21 108.6 74 66.2
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 6.5e-15 86.7 48 77.1
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 8.5e-15 86.3 61 62.3
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 7.4e-11 73.2 59 69.5
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 7.4e-11 73.2 48 68.8
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 4.1e-09 67.4 302 27.8
SEGI_37257 Sequoiadendron giganteum HOM05D005597 ORTHO05D384574 7.2e-06 56.6 66 51.5


User provided reference genes

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