Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 2.7e-280 968.0 483 100.0
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-246 856.3 453 92.3
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 6.9e-236 820.5 453 88.5
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 2.5e-233 812.0 462 85.7
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.6e-230 802.0 471 83.9
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 8.2e-229 797.0 453 85.7
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 4.1e-228 794.7 458 85.2
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 4.4e-214 748.0 456 78.7
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 1.4e-212 743.0 472 77.3
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 7.7e-211 737.3 458 76.6
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 1.5e-209 733.0 458 75.3
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 5.5e-209 731.1 458 77.1
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 8.0e-208 727.2 443 79.0
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 3.0e-207 725.3 457 76.1
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 5.2e-207 724.5 459 75.8
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 3.4e-206 721.8 461 76.8
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 2.2e-205 719.2 458 73.4
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 2.4e-204 715.7 451 75.2
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 5.4e-204 714.5 458 74.9
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 7.0e-204 714.1 458 74.2
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 9.2e-204 713.8 458 73.8
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 1.2e-203 713.4 459 74.5
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 2.3e-202 709.1 460 73.0
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 5.0e-202 708.0 460 72.6
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 1.9e-201 706.1 471 75.2
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 5.6e-201 704.5 454 73.3
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 9.5e-201 703.7 459 72.3
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.6e-200 703.0 459 72.5
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 2.1e-200 702.6 455 74.7
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 4.7e-200 701.4 459 75.2
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 6.1e-200 701.0 457 73.7
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 4.0e-199 698.4 460 73.3
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 6.8e-199 697.6 474 72.4
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 2.6e-198 695.7 456 73.0
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 3.4e-198 695.3 455 73.6
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 7.5e-198 694.1 455 72.1
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 9.8e-198 693.7 457 73.1
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 1.3e-197 693.3 457 73.3
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 1.7e-197 693.0 456 73.5
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.9e-197 692.2 396 84.8
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 6.4e-197 691.0 457 72.4
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 1.1e-196 690.3 457 72.6
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 7.0e-196 687.6 456 71.3
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 9.2e-196 687.2 459 71.7
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 3.5e-195 685.3 461 71.1
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 4.6e-195 684.9 459 71.0
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 4.6e-195 684.9 460 72.8
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.3e-194 682.6 460 72.0
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.5e-193 679.9 457 71.1
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 1.5e-193 679.9 460 71.7
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 1.9e-193 679.5 460 71.3
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.9e-193 679.5 460 72.6
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.9e-193 679.5 460 71.5
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 2.5e-193 679.1 460 71.3
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 3.3e-193 678.7 457 72.0
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 7.3e-193 677.6 459 71.5
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 7.3e-193 677.6 459 71.2
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 2.1e-192 676.0 459 71.0
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 2.8e-192 675.6 473 68.9
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 3.6e-192 675.2 457 71.6
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 6.2e-192 674.5 498 66.3
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 8.0e-192 674.1 458 72.3
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.4e-191 673.3 454 70.3
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 1.5e-190 669.8 453 71.7
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 1.5e-190 669.8 453 71.7
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 2.0e-190 669.5 451 71.4
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 2.6e-190 669.1 448 72.5
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 1.4e-188 663.3 468 70.3
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 3.2e-188 662.1 456 70.4
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.2e-187 660.2 476 68.7
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.0e-186 655.6 466 70.4
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 8.6e-186 654.1 461 69.4
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 8.6e-186 654.1 466 70.2
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 7.3e-185 651.0 467 67.9
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.8e-183 646.4 455 70.3
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.0e-182 642.9 462 69.3
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.6e-182 642.5 425 72.7
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 3.4e-182 642.1 463 67.2
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 1.1e-180 637.1 463 66.7
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 7.1e-180 634.4 503 62.4
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 1.2e-179 633.6 458 67.5
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 1.6e-179 633.3 427 71.4
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 3.9e-178 628.6 453 67.1
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.1e-177 627.1 460 67.2
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.5e-177 626.7 398 74.1
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 1.9e-177 626.3 474 66.5
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 2.3e-170 602.8 410 70.7
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 1.6e-168 596.7 451 64.1
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.1e-164 583.9 460 63.3
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 1.2e-163 580.5 458 63.3
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 5.1e-162 575.1 425 65.6
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.1e-160 569.7 471 62.6
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 8.4e-157 557.8 460 62.4
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 5.8e-150 535.0 466 59.2
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 4.8e-144 515.4 281 89.7
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 3.1e-143 512.7 462 57.4
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 3.8e-141 505.8 310 78.1
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 1.4e-140 503.8 475 56.0
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 5.1e-138 495.4 448 56.0
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.2e-125 453.4 427 56.9
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 2.9e-125 453.0 342 62.6
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 3.1e-119 433.0 298 71.5
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.4e-116 424.1 300 67.0
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.6e-107 394.0 334 62.3
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.4e-103 380.9 348 59.5
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 4.5e-102 375.9 456 45.6
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 3.2e-100 369.8 406 48.0
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 3.1e-95 353.2 378 51.3
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 1.0e-93 348.2 453 46.8
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 3.4e-89 333.2 230 65.2
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 8.3e-88 328.6 468 40.4
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 1.1e-87 328.2 455 41.8
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 1.9e-84 317.4 462 40.5
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 1.4e-79 301.2 247 63.6
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.4e-79 299.3 304 53.3
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 3.6e-75 286.6 253 53.4
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.7e-72 277.7 233 60.1
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.9e-60 237.7 162 66.7
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 3.4e-57 226.9 164 65.2
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 4.4e-49 199.9 118 83.9
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 2.1e-46 191.0 171 63.7
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 5.8e-41 172.9 110 78.2
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 9.3e-39 165.6 119 65.5
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 7.9e-38 162.5 126 62.7
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 1.5e-36 158.3 127 63.0
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 4.3e-28 130.2 102 65.7
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 3.9e-21 107.1 86 57.0
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-20 105.5 321 28.7
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 3.7e-19 100.5 100 51.0
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-17 94.7 52 88.5
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-14 85.5 63 65.1
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 1.1e-07 62.4 54 63.0


User provided reference genes

Program Settings